Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G23960 304 / 2e-96 ATTPS21 terpene synthase 21 (.1.2) AT3G14520 283 / 1e-87 AtTPS18 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) AT3G14540 274 / 3e-84 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) AT1G31950 273 / 6e-84 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) AT3G29410 273 / 6e-84 AtTPS25 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) AT3G14490 270 / 2e-82 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) AT1G70080 258 / 4e-78 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) AT4G16740 251 / 6e-76 ATTPS03 terpene synthase 03 (.1.2) AT2G24210 244 / 6e-73 AtTPS10 terpene synthase 10 (.1) AT3G25820 244 / 6e-73 ATTPS-CIN "terpene synthase-like sequence-1,8-cineole", terpene synthase-like sequence-1,8-cineole (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002660 [exp] 534 / 0 AT3G14520 310 / 4e-98 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Lus10008611 [exp] 516 / 4e-178 AT5G23960 348 / 4e-113 terpene synthase 21 (.1.2) Lus10042204 [exp] 511 / 1e-176 AT5G23960 347 / 4e-113 terpene synthase 21 (.1.2) Lus10042202 [exp] 468 / 8e-160 AT5G23960 302 / 8e-96 terpene synthase 21 (.1.2) Lus10008614 [exp] 459 / 1e-156 AT5G23960 345 / 1e-112 terpene synthase 21 (.1.2) Lus10014724 [exp] 449 / 1e-152 AT5G23960 314 / 2e-100 terpene synthase 21 (.1.2) Lus10031590 [exp] 443 / 4e-150 AT5G23960 378 / 3e-125 terpene synthase 21 (.1.2) Lus10031589 [exp] 344 / 5e-111 AT5G23960 318 / 3e-101 terpene synthase 21 (.1.2) Lus10039713 [exp] 266 / 9e-81 AT4G16740 409 / 4e-136 terpene synthase 03 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G095500 [exp] 540 / 0 AT5G23960 408 / 6e-137 terpene synthase 21 (.1.2) Potri.011G142800 [exp] 442 / 1e-149 AT5G23960 405 / 2e-135 terpene synthase 21 (.1.2) Potri.015G085500 [exp] 422 / 4e-142 AT5G23960 456 / 1e-155 terpene synthase 21 (.1.2) Potri.015G032100 [exp] 407 / 5e-136 AT5G23960 444 / 8e-151 terpene synthase 21 (.1.2) Potri.019G020367 [exp] 351 / 2e-114 AT5G23960 494 / 7e-171 terpene synthase 21 (.1.2) Potri.019G045100 [exp] 348 / 3e-113 AT5G23960 474 / 2e-162 terpene synthase 21 (.1.2) Potri.019G023004 [exp] 342 / 7e-111 AT5G23960 474 / 8e-163 terpene synthase 21 (.1.2) Potri.019G016900 [exp] 333 / 2e-107 AT5G23960 474 / 6e-163 terpene synthase 21 (.1.2) Potri.019G016500 [exp] 331 / 8e-107 AT5G23960 463 / 6e-159 terpene synthase 21 (.1.2) Potri.019G016700 [exp] 331 / 9e-107 AT5G23960 482 / 6e-166 terpene synthase 21 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01397 [flax] [poplar] Terpene_synth Terpene synthase, N-terminal domain CL0613 [flax] [poplar] Terp_synthase PF03936 [flax] [poplar] Terpene_synth_C Terpene synthase family, metal binding domain
Representative CDS sequence Show only first row Show all	>Lus10040043 pacid=23173542 polypeptide=Lus10040043 locus=Lus10040043.g ID=Lus10040043.BGIv1.0 annot-version=v1.0 ATGACCGCCTTTGAAGTTCCAACCCCTGCCCCCAGTACTTTTCCCAGCCAAACAGTTGAATTCCATCCCACTGTCTGGGGTGACTTCTTTCTCACTAATC TTTCCCTCCCCGACCAGGCAGCAGTAAATGGGTGGCAGGAAGAAATATCAGTCCTGAAACATAATGTGAAAGGTGCATTGTTGTTGGAGACGATTTCCTG GCAGAAACAGCTCAGTCTCATTGATGTCATTGAACGCCTTGGCATTGGATATCTTTTCCAGGACGAAATTGACCAACAACTCAAACTCATTTACCACTAC ACTACTTGTCCCTCTCCTCATGATCATGATCGCGATATCCGCTCTATCTCCCTTCATTTTCGACTGTTGAGACAACACGGATATCAGGTCTCATCTGATG TATTCAACAAGTTCAAGAATGAGGAAGGCAAGTTCAAGGAGGAGCTGAAGAGTGATATTGAAGGCATGCTAGGGTTGTACGAAGCTGGATATCTGGGTGT TCCAGGGGAAAATATATTAGTTGAAGCTATTGAATTCACCAAAACCTGCCTCCAGTACTCGACTGCGGCTGATCATGAGTTGGATCCACCTCTAGCGGAA CGAATCAGGCATGCCTTGAACCGGCCGCTGCGCAAAGGGGTGGAGAAGCACGAGCAGCTTTCCTTCATCTCCGTTTATGAACAAGACACAACACATGACC CATCTCTTCTTAGGCTAGCAAAGTTGTGCTTCAATTCTGTACAGGTTTTGTACCAGAAGGAGCTGAGGGATCTCACCAGGTGGTGGGTGGAGTTGGATTT AGCAAAGAAGCTGCCATTTGCTAGAGACAGATTAGTGGAGGTTTACTTTTGGGCAATGGGGGCTGTGTGGGAGCCCAAATATTCAGCTTCCAGGCACTTT CTGACTAAAGTTACTATGTTCGTTTCATTTCTTGATGATATCTATGATGTGCAAGCCACCATTGAACAGCTTGAGCTTTTCACTCAGACCATAACCAGGT GGGACACTAAGAAGATGGATCAATATCTACCAGAGTATATGGGTGATTGGTTGGAAGGAATGATAAGGGTGGTGGATGAGATTGATGAAATCACCACAAG AGATGGAAAGGAGTACTGTGGGGAGTATGTAAGATTAGCAGTGATAAATCAGGCGAAGGCATATCTAAGGGAAGCAAGGTGGTTGGGGCAGAATTTGATC CCAAGCGTGGAGGAATATAGACGAGTTGGCGTATACTCATGTTGTTACCCTTTGCTCTCCGTCTCTATTCTGTGTGGGATGATGATCAATGCTGAGAATG CATCCAAAGAGGCCTTCCAATGGCTCCTTAATGATCCTCCGATTCTCGTTGCTTCCTCCGATATATGTCGTCTCATGGATGATCTCGTCTCCCACGAGTT TGAGCAGGAGAGGGGACATGTTGCTTCATCGATAGAGTGTTACATGAAAGAATACGGAGTAGGGAAGCTCGAGGCGCGGATTGCAATCAACAAAATGGTG GAAGAGGACTGGAAGGAGATTAACAAGGAGTTGTTGTTGATGATGAAACCGGAAAATAGCAGCAGCTCCAAGTTTTCACCAGCAAAGGAAGTTGTGTTGA TGTTTATAAGGTTGGCCCAGGTGATGGATGTATTGTACAAGGAATCTGATGGCTATACAAACTCCAACACTAGCACCAAGGACATCCTCACTGCTTTGCT CCTCACTCCCATCGTCCTTTAA
AA sequence Show only first row Show all	>Lus10040043 pacid=23173542 polypeptide=Lus10040043 locus=Lus10040043.g ID=Lus10040043.BGIv1.0 annot-version=v1.0 MTAFEVPTPAPSTFPSQTVEFHPTVWGDFFLTNLSLPDQAAVNGWQEEISVLKHNVKGALLLETISWQKQLSLIDVIERLGIGYLFQDEIDQQLKLIYHY TTCPSPHDHDRDIRSISLHFRLLRQHGYQVSSDVFNKFKNEEGKFKEELKSDIEGMLGLYEAGYLGVPGENILVEAIEFTKTCLQYSTAADHELDPPLAE RIRHALNRPLRKGVEKHEQLSFISVYEQDTTHDPSLLRLAKLCFNSVQVLYQKELRDLTRWWVELDLAKKLPFARDRLVEVYFWAMGAVWEPKYSASRHF LTKVTMFVSFLDDIYDVQATIEQLELFTQTITRWDTKKMDQYLPEYMGDWLEGMIRVVDEIDEITTRDGKEYCGEYVRLAVINQAKAYLREARWLGQNLI PSVEEYRRVGVYSCCYPLLSVSILCGMMINAENASKEAFQWLLNDPPILVASSDICRLMDDLVSHEFEQERGHVASSIECYMKEYGVGKLEARIAINKMV EEDWKEINKELLLMMKPENSSSSKFSPAKEVVLMFIRLAQVMDVLYKESDGYTNSNTSTKDILTALLLTPIVL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G23960		ATTPS21	terpene synthase 21 (.1.2)		Lus10040043 [exp]	0	1
AT3G04720		HEL, PR-4, PR4	HEVEIN-LIKE, pathogenesis-rela...		Lus10013728 [exp]	3.6	0.9221
					Lus10023200 [exp]	4.4	0.8204
AT2G23600		ATMES2, ACL, AT...	ARABIDOPSIS THALIANA METHYL ES...		Lus10012854 [exp]	5.1	0.9221
					Lus10026928 [exp]	6.2	0.9221
AT2G46150			Late embryogenesis abundant (L...		Lus10027177 [exp]	7.2	0.9221
AT4G10320			tRNA synthetase class I (I, L,...		Lus10025306 [exp]	7.9	0.8122
					Lus10040877 [exp]	7.9	0.7122
AT4G37330		CYP81D4	"cytochrome P450, family 81, s...		Lus10024817 [exp]	8.1	0.9221
AT3G07680			emp24/gp25L/p24 family/GOLD fa...		Lus10006360 [exp]	9.2	0.9141
AT1G65730		YSL7	YELLOW STRIPE like 7 (.1)		Lus10010205 [exp]	9.3	0.6845

Compare expression of checked genes

Lus10040043 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.