Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G54840 297 / 5e-101 ATSGP1 Ras-related small GTP-binding family protein (.1.2) AT3G21700 246 / 5e-81 ATSGP2 Ras-related small GTP-binding family protein (.1.2.3) AT2G44610 67 / 3e-13 RAB6, AtRABH1b, AtRab6A Ras-related small GTP-binding family protein (.1) AT1G05810 67 / 7e-13 ARA, Ara-1, AtRab11D, AtRABA5e ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG A5E, RAB GTPase homolog A5E (.1) AT2G22290 66 / 8e-13 ATRAB6, ATRAB-H1D, AtRABH1d ARABIDOPSIS RAB GTPASE HOMOLOG 6, ARABIDOPSIS RAB GTPASE HOMOLOG H1D, RAB GTPase homolog H1D (.1) AT5G65270 66 / 2e-12 AtRABA4a RAB GTPase homolog A4A (.1) AT4G39890 65 / 2e-12 AtRABH1c RAB GTPase homolog H1C (.1) AT4G19640 65 / 3e-12 ATRAB-F2B, ARA7, Ara-7, AtRABF2b, AtRab5B ARABIDOPSIS RAB GTPASE HOMOLOG F2B, Ras-related small GTP-binding family protein (.1) AT5G10260 64 / 4e-12 AtRABH1e RAB GTPase homolog H1E (.1) AT5G47520 63 / 1e-11 AtRABA5a RAB GTPase homolog A5A (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019615 [exp] 476 / 7e-172 AT5G54840 330 / 6e-114 Ras-related small GTP-binding family protein (.1.2) Lus10039670 [exp] 244 / 1e-80 AT3G21700 325 / 3e-112 Ras-related small GTP-binding family protein (.1.2.3) Lus10031559 [exp] 244 / 3e-80 AT3G21700 340 / 5e-118 Ras-related small GTP-binding family protein (.1.2.3) Lus10015119 [exp] 237 / 2e-77 AT3G21700 335 / 7e-116 Ras-related small GTP-binding family protein (.1.2.3) Lus10027172 [exp] 229 / 2e-74 AT3G21700 313 / 2e-107 Ras-related small GTP-binding family protein (.1.2.3) Lus10028820 [exp] 69 / 7e-14 AT3G54840 354 / 3e-126 Ras-related small GTP-binding family protein (.1.2) Lus10043349 [exp] 67 / 4e-13 AT2G44610 407 / 5e-147 Ras-related small GTP-binding family protein (.1) Lus10019501 [exp] 67 / 4e-13 AT2G44610 407 / 5e-147 Ras-related small GTP-binding family protein (.1) Lus10017462 [exp] 67 / 2e-12 AT3G54840 349 / 1e-121 Ras-related small GTP-binding family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G420700 [exp] 349 / 7e-122 AT5G54840 363 / 2e-127 Ras-related small GTP-binding family protein (.1.2) Potri.011G136300 [exp] 347 / 7e-121 AT5G54840 370 / 5e-130 Ras-related small GTP-binding family protein (.1.2) Potri.014G152100 [exp] 257 / 1e-85 AT3G21700 315 / 2e-108 Ras-related small GTP-binding family protein (.1.2.3) Potri.003G086700 [exp] 70 / 5e-14 AT2G44610 397 / 4e-143 Ras-related small GTP-binding family protein (.1) Potri.002G135500 [exp] 69 / 1e-13 AT2G44610 385 / 3e-138 Ras-related small GTP-binding family protein (.1) Potri.007G096000 [exp] 68 / 3e-13 AT5G65270 404 / 2e-145 RAB GTPase homolog A4A (.1) Potri.005G075300 [exp] 66 / 1e-12 AT5G10260 400 / 2e-144 RAB GTPase homolog H1E (.1) Potri.006G057700 [exp] 66 / 2e-12 AT3G12160 387 / 1e-138 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG A4D, RAB GTPase homolog A4D (.1) Potri.010G226300 [exp] 64 / 5e-12 AT3G54840 373 / 7e-134 Ras-related small GTP-binding family protein (.1.2) Potri.005G073000 [exp] 64 / 6e-12 AT5G65270 402 / 1e-144 RAB GTPase homolog A4A (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF08477 [flax] [poplar] Roc Ras of Complex, Roc, domain of DAPkinase
Representative CDS sequence Show only first row Show all	>Lus10040044 pacid=23173407 polypeptide=Lus10040044 locus=Lus10040044.g ID=Lus10040044.BGIv1.0 annot-version=v1.0 ATGATGTACCGCAAAATCACTCGTTTAGAAATCAAGTGGAGCATCCTGGAACGCGTCTCTGTTTTCCGGCACTTTTTCCACTTCATTTGGGACAGGATTC TCTCCTGTTCCATTGGCAAGCCCCCTACCAAGTATCGCCGCCTCACTACTTCCCCCTTTACTCCTCCTTCTTGTTTCTCTTCGCCTTCTCGGCTTGACCA CGACGACGATCACGAGGGGCTTCCTTTCCAGCTGCCGGCCAGCGGTGGTAGCGGAGACTTGAGCAACTTTTCCGACTCCAATTTGGTGCCCCTCAAGATC ACCCTCCTCGGTGATTCCCATATTGGCAAAACAAGCTTTCTGATCAAGTACGTTGGGGATGAACAGGAGAAGAATAGCCTGGAAATGGGTGGATTGAATT TAATGGACAAGACAATGTTTGTTCAAGATGCAAGGATATCATTCAGCATTTGGGATGTTGGAGGGGATGGCAGGGCGTTTGATCATGTCCCCATTGCATG TAAAGATGCAGTTGCAATTCTATTCATGTTTGATCTCACCAGTAGATGCACACTCAACAGTGTTGCTGGGTGGTATGCTGAAGCCAGGAAATGGAACCAG ACAGCTATTCCAATCCTGATAGGGACCAAATTTGACGATTTCGTTAGGCTACCTCCGAATGTACAGTGGACGATAGCGACCCAGGCAAGGGGATATGCAA GAGCAATGAAGGCGGGCCTATTCTTTTCAAGTGCGAAACACAACATAAATGTGAACAAGATCTTCAAGTTCATCATAGCAAAGTTGTTTAACCTGCCTTG GTCGCCTCAGAGGAACCTTACCATTGGGGAGCCCATTATTGACTACTTCTAA
AA sequence Show only first row Show all	>Lus10040044 pacid=23173407 polypeptide=Lus10040044 locus=Lus10040044.g ID=Lus10040044.BGIv1.0 annot-version=v1.0 MMYRKITRLEIKWSILERVSVFRHFFHFIWDRILSCSIGKPPTKYRRLTTSPFTPPSCFSSPSRLDHDDDHEGLPFQLPASGGSGDLSNFSDSNLVPLKI TLLGDSHIGKTSFLIKYVGDEQEKNSLEMGGLNLMDKTMFVQDARISFSIWDVGGDGRAFDHVPIACKDAVAILFMFDLTSRCTLNSVAGWYAEARKWNQ TAIPILIGTKFDDFVRLPPNVQWTIATQARGYARAMKAGLFFSSAKHNINVNKIFKFIIAKLFNLPWSPQRNLTIGEPIIDYF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G54840		ATSGP1	Ras-related small GTP-binding ...		Lus10040044 [exp]	0	1
AT5G55060			unknown protein		Lus10040061 [exp]	2.4	0.9542
AT2G36320			A20/AN1-like zinc finger famil...		Lus10003246 [exp]	2.4	0.9522
AT1G44770			unknown protein		Lus10034500 [exp]	3.9	0.9544
AT3G26935			DHHC-type zinc finger family p...		Lus10016754 [exp]	3.9	0.9529
AT3G59660			C2 domain-containing protein /...		Lus10025600 [exp]	6.5	0.9426
AT5G61500		ATATG3	autophagy 3 (APG3) (.1)		Lus10009664 [exp]	6.9	0.9443
AT5G54840		ATSGP1	Ras-related small GTP-binding ...		Lus10019615 [exp]	8.7	0.9419
AT4G16520		ATG8F	autophagy 8f, Ubiquitin-like s...		Lus10028933 [exp]	14.6	0.9528
AT4G35110			Arabidopsis phospholipase-like...		Lus10026277 [exp]	16.9	0.9448
AT3G26020			Protein phosphatase 2A regulat...		Lus10037057 [exp]	17.3	0.9315

Compare expression of checked genes

Lus10040044 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.