Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G27060 748 / 0 CN, SPR2, TOR1 TORTIFOLIA 1, SPIRAL 2, CONVOLUTA, ARM repeat superfamily protein (.1) AT1G50890 637 / 0 ARM repeat superfamily protein (.1) AT2G07170 144 / 7e-35 ARM repeat superfamily protein (.1) AT1G27210 141 / 1e-34 ARM repeat superfamily protein (.1) AT5G62580 120 / 5e-28 ARM repeat superfamily protein (.1) AT1G59850 111 / 2e-25 ARM repeat superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011149 [exp] 1049 / 0 AT4G27060 911 / 0.0 TORTIFOLIA 1, SPIRAL 2, CONVOLUTA, ARM repeat superfamily protein (.1) Lus10043053 [exp] 1036 / 0 AT4G27060 891 / 0.0 TORTIFOLIA 1, SPIRAL 2, CONVOLUTA, ARM repeat superfamily protein (.1) Lus10019618 [exp] 972 / 0 AT4G27060 507 / 8e-171 TORTIFOLIA 1, SPIRAL 2, CONVOLUTA, ARM repeat superfamily protein (.1) Lus10019616 [exp] 542 / 0 AT4G27060 254 / 2e-78 TORTIFOLIA 1, SPIRAL 2, CONVOLUTA, ARM repeat superfamily protein (.1) Lus10019617 [exp] 154 / 8e-43 AT1G50890 99 / 2e-24 ARM repeat superfamily protein (.1) Lus10027590 [exp] 165 / 1e-41 AT2G07170 702 / 0.0 ARM repeat superfamily protein (.1) Lus10033129 [exp] 127 / 7e-30 AT5G62580 507 / 8e-174 ARM repeat superfamily protein (.1) Lus10036647 [exp] 122 / 2e-28 AT5G62580 496 / 2e-169 ARM repeat superfamily protein (.1) Lus10010730 [exp] 118 / 5e-27 AT1G27210 459 / 8e-155 ARM repeat superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G421200 [exp] 1006 / 0 AT4G27060 884 / 0.0 TORTIFOLIA 1, SPIRAL 2, CONVOLUTA, ARM repeat superfamily protein (.1) Potri.011G136700 [exp] 998 / 0 AT4G27060 855 / 0.0 TORTIFOLIA 1, SPIRAL 2, CONVOLUTA, ARM repeat superfamily protein (.1) Potri.006G079500 [exp] 152 / 1e-37 AT2G07170 793 / 0.0 ARM repeat superfamily protein (.1) Potri.015G069200 [exp] 145 / 8e-36 AT5G62580 366 / 9e-119 ARM repeat superfamily protein (.1) Potri.012G074400 [exp] 129 / 8e-31 AT5G62580 332 / 9e-106 ARM repeat superfamily protein (.1) Potri.010G038900 [exp] 109 / 2e-24 AT1G27210 480 / 9e-163 ARM repeat superfamily protein (.1) Potri.008G192100 [exp] 109 / 3e-24 AT1G27210 474 / 3e-160 ARM repeat superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF02985 [flax] [poplar] HEAT HEAT repeat
Representative CDS sequence Show only first row Show all	>Lus10040047 pacid=23173482 polypeptide=Lus10040047 locus=Lus10040047.g ID=Lus10040047.BGIv1.0 annot-version=v1.0 ATGAGCTCGCAGTCGAAGGTGGCCAAATCTGGCAGAAATGCGAAACAAGCCACCAACTCTAGATCTTCCTCCCTGGCCACCCATTTAGCCATGGTGGAGC TAAAGCAACGAATCCTAACTTCCCTGTCAAAGCTCGGTGATAGGGACACCCATCAGATCGCTCTTGAGGACCTCCAGACAATTACCAATACTCTCTCCCC TGAAGCCCTCCCAATGCTTCTCAATTCCATCTACGATACTCTCTCCGACAACTCCACTGCCAAGCCCTCCGTCAAGAAGGAGTCCCTTCACTTGCTCGCT CTCGTTTGTCAATCCCATCGCGAATTGACGCTCCCCCATCTCACCAAACTCATTACCCACATTGTTAAGAGGCTTAAGGATTCGGATTCTGGAGTTAGGG ATGCTTGCCGAGATGCTATCGGTGTTTTGTCCGGTCTGTATCTCAAGAGTGCTGGTGAAGGTGTGAGCGGGCATGTGGTTGGTTTGTTCGTGAAGCCGAT GTATGAAGCCATGGGGGAACAGAACAAACTTGTTCAGGCGGCTGCTTCGTCTTGTATGGCTAAAATGATTGACTGTGCAGCTTCTGTAGATAAAGATGGT GATTGCGGTGCTCCTTTTCAAAAGCTCTCTCCCACGATTTGTAAATTGCTTAATGGACATAATTTCCAGGCCAAGGCAGCTTTGTTGGGTGTAGTGGCAA GTTTGTCCCAGGTTGCCCTCAAGCAGAAAGTCCTGATTTCTTTGTCTAAACTTGCTGATCATGACACCTACCAGATTGCATTTGAAAACCTTGATTCGCT TGCTCAATCCCTGTCGCTCAATGATCTTCCAATACTTCTTAATGCTCTCTATTCCAGTTCCTCTAACGTGAATAATAAACCAATTGTCAGGAGGGAATCT ATCCATTTACTCTCACTTTGTTATCAATATCATTCTGACTTAAGATTACCCAAACTAAGGAGAACCATTACCCACATTATTGAAATGTTGAGAGATTCAG ACCCTAGTGTTAGGAAAGCTTGCTGCACAACCATTGGGGTTTTGTCAGGGATATACTTGAAACAGGAGGTGGTCAGTGAAGCCAGAGTCAAATTATTCGT TGGACATTTATTTAAAGCCTTGAGAGAACAAAATGAAGACGTGCAATCGGGAGCAGCAATGTGTTTGACGAAGATGGTGGACTGTGCTGCAAGCAATAAC ACTGTAGTAGCAGGATTTAAGAATCTGTTGTCTAGCATTTGTAAAATGCTGAGCAGTAAAAGTTTTCTAGCAAAGGCTTCACTTTTAAGCACTGTCTCCA TGCTCTCACAGGTAGGGGCGGTTGCCCCACAAAGCTTGGAACCTTTGCTGCAGAACATTCATGGCTGTCTTACAAGTACTGATTGGGCAACACGCAAGGC TGGAGCTGACGCTTTAAGTGCTTTAGCAGTCCATTCTTGCAGTTTAGTTTCAGCTGAAGCTGCTGATTCCACATTGACGGCACTTGAGGCTTGCCGTTTT GACAAGATAAAACCTGTTAGAGATAGCATGAATGAGGCATTGCAACTGTGGAAGAAGATTGCTCGGAAAGAAGATGGAGTTTCAGATCACCAGAAAGCTC CCTGTCCAGGAGGTGAAACTCGAGAGAAGGCTGAATTATCAGACAAGAATGTGAATGTTATAGATAGAAGAGTAGAGTCTTCAATGAGAGACCAGGCTGA TGGATCATCCCCAGGCATGGATTCAACTTCAAAGACCAATGCTGGAAACATATCAGACAAGGCAGTTGTAATTCTGAAGAAGAAACCACCTGTACTAACA GATAAAGAGCTTAACCCAGAATTCTTCCAGAATCTTGAAAAGGGTTCTGGTGAATTACCTGTTGAAGTTTCTGTTCCTTGTAGATGCGTCAATTCTTCAA ATCTGAACAACGAGGAAGAATCAATATCAAATAATATAGAATCAAGGGGAAGATCGGACCACTCTACAAACAAGTCTGATAATCAGCAATTTGATAAAAT ATGCCGTATCAGCGATAGAGGAATCATGGGGAGGGACTCCAGAAGCAGAGCATTTGATGGACAGACTGATTCTAACAGTAGGGAAACAACCGGAAATCAT GCAAGTCTGGCCAAAACTGATGGAGAGCCAGAAGGATCCTTGGGAAATAGTAGAGGAAATTGGTTGGCCATCCAGAGACAGTTGCTGCAACTAGAAAAGC AACAGACTCATCTAATGCACATGCTTCAGGATTTTATGGGCGGATCTCATGATAGCATCGTGACCTTGGAAAACAGAGTTCGAGGTCTTGAGAGAGTTGT GGAAGACATGGCTCGAGATCTGTCCATGTCCTCTGCGAGGAGAGATGGCAGTTTTGCCATGGGTTTTGAAGGTTCAACTTCCAATAGATCACTAGGCAAG TACAATGGTTTTCCGGATTATTCCAGTACAAAGTACAGTGGTCGGGGGCATTTTGGAGATGGATATGAGCGGTATGAAGTTACTGCAAGGGGGAGAAATC CTCAGTGGAGAGCGAACACATCAGAGACTTGGGATTTCACATTGTATGGTTCTTCAAGAAGAGGTCAGGTAGGATCAAGAAGAGCTGCAGGTTGTGGTGG TCCTATAGGGTCACCTAAATCTGAGCATGAAAATGATAAAGGAAGCAGCAGAAGGGGTTGGGATAAAGGTGGTGGGCCCTCTAGGTTTGGCGAGGGGCCT TCTGCTAGAAGTGTTTGGCAAGCATCCAAAGATGAAGCCACCTTGGAAGCCATCCGGGTTGCAGGGGAAGACAATGGATTACTAAGGACTTCCAGGGTGG CCATCCCTGAGTTGACTGCAGAAGCAATGGGAGACAACAATGGTGAGCTAGAGCGGGATCCGATTTGGACTTCGTGGAGCAATGCAATGGATGCCCTAAA AGTTGGTGATATGGATACAGTTTATGCAGAAGTTTGTTCGACTGGAGATGAGCAATTGATTGTAAAGATCATGGAGAGGACAGGCCCAGTAATTGACCAA CTAACAAATGAAACAGCATGTGAAGTATTGCATGCAATTTCTCAGTTCTTGTTGGATCACAACTTATTTGATCTATGTTACTCTTGGATTCATCAGTTGG TAGAGATAGTGATGGAAGATGGAGGTGAAGTAATGGGGATCCCCGTGGAAATGAAGAGGGAGCTTTTGTTTAACTTAAATGAAGCATCAACGGCAATGGA GCAGCCAGAGGAGTGGGAAGGAGTGTCTCCTGACCAACTACTGTTGCAGCTGGCATCAGCTTGGGGGATTGAATTACAACAATTTGATAAGTGA
AA sequence Show only first row Show all	>Lus10040047 pacid=23173482 polypeptide=Lus10040047 locus=Lus10040047.g ID=Lus10040047.BGIv1.0 annot-version=v1.0 MSSQSKVAKSGRNAKQATNSRSSSLATHLAMVELKQRILTSLSKLGDRDTHQIALEDLQTITNTLSPEALPMLLNSIYDTLSDNSTAKPSVKKESLHLLA LVCQSHRELTLPHLTKLITHIVKRLKDSDSGVRDACRDAIGVLSGLYLKSAGEGVSGHVVGLFVKPMYEAMGEQNKLVQAAASSCMAKMIDCAASVDKDG DCGAPFQKLSPTICKLLNGHNFQAKAALLGVVASLSQVALKQKVLISLSKLADHDTYQIAFENLDSLAQSLSLNDLPILLNALYSSSSNVNNKPIVRRES IHLLSLCYQYHSDLRLPKLRRTITHIIEMLRDSDPSVRKACCTTIGVLSGIYLKQEVVSEARVKLFVGHLFKALREQNEDVQSGAAMCLTKMVDCAASNN TVVAGFKNLLSSICKMLSSKSFLAKASLLSTVSMLSQVGAVAPQSLEPLLQNIHGCLTSTDWATRKAGADALSALAVHSCSLVSAEAADSTLTALEACRF DKIKPVRDSMNEALQLWKKIARKEDGVSDHQKAPCPGGETREKAELSDKNVNVIDRRVESSMRDQADGSSPGMDSTSKTNAGNISDKAVVILKKKPPVLT DKELNPEFFQNLEKGSGELPVEVSVPCRCVNSSNLNNEEESISNNIESRGRSDHSTNKSDNQQFDKICRISDRGIMGRDSRSRAFDGQTDSNSRETTGNH ASLAKTDGEPEGSLGNSRGNWLAIQRQLLQLEKQQTHLMHMLQDFMGGSHDSIVTLENRVRGLERVVEDMARDLSMSSARRDGSFAMGFEGSTSNRSLGK YNGFPDYSSTKYSGRGHFGDGYERYEVTARGRNPQWRANTSETWDFTLYGSSRRGQVGSRRAAGCGGPIGSPKSEHENDKGSSRRGWDKGGGPSRFGEGP SARSVWQASKDEATLEAIRVAGEDNGLLRTSRVAIPELTAEAMGDNNGELERDPIWTSWSNAMDALKVGDMDTVYAEVCSTGDEQLIVKIMERTGPVIDQ LTNETACEVLHAISQFLLDHNLFDLCYSWIHQLVEIVMEDGGEVMGIPVEMKRELLFNLNEASTAMEQPEEWEGVSPDQLLLQLASAWGIELQQFDK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G27060		CN, SPR2, TOR1	TORTIFOLIA 1, SPIRAL 2, CONVOL...		Lus10040047 [exp]	0	1
AT2G47500			P-loop nucleoside triphosphate...		Lus10009851 [exp]	4.5	0.8512
AT5G54390		ATAHL, AHL	HAL2-like (.1)		Lus10038597 [exp]	10.5	0.8223
AT4G19180			GDA1/CD39 nucleoside phosphata...		Lus10034777 [exp]	12.4	0.8346
AT4G15415		ATB'GAMMA, ATB'...	Protein phosphatase 2A regulat...		Lus10014618 [exp]	15.0	0.8204
AT3G13980			unknown protein		Lus10008457 [exp]	17.5	0.7774
AT5G48800			Phototropic-responsive NPH3 fa...		Lus10038169 [exp]	24.5	0.8080
AT3G43300		BEN1, ATMIN7	BFA-VISUALIZED ENDOCYTIC TRAFF...		Lus10038084 [exp]	25.3	0.8280
AT5G52882			P-loop containing nucleoside t...		Lus10027550 [exp]	26.9	0.7896
AT1G50500		ATVPS53, HIT1	HEAT-INTOLERANT 1, ARABIDOPSIS...		Lus10009635 [exp]	29.1	0.8260
AT1G35780			unknown protein		Lus10009931 [exp]	31.4	0.7914

Compare expression of checked genes

Lus10040047 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.