Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G20540 966 / 0 PolIB, POLGAMMA1 polymerase I B, polymerase gamma 1 (.1.2) AT1G50840 954 / 0 PolIA, POLGAMMA2 polymerase I A, polymerase gamma 2 (.1) AT4G32700 92 / 9e-19 TEB TEBICHI, helicases;ATP-dependent helicases;nucleic acid binding;ATP binding;DNA-directed DNA polymerases;DNA binding (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019619 [exp] 1321 / 0 AT3G20540 1212 / 0.0 polymerase I B, polymerase gamma 1 (.1.2) Lus10022115 [exp] 80 / 5e-15 AT4G32700 2356 / 0.0 TEBICHI, helicases;ATP-dependent helicases;nucleic acid binding;ATP binding;DNA-directed DNA polymerases;DNA binding (.2) Lus10007673 [exp] 52 / 9e-07 AT4G32700 313 / 6e-94 TEBICHI, helicases;ATP-dependent helicases;nucleic acid binding;ATP binding;DNA-directed DNA polymerases;DNA binding (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G421300 [exp] 998 / 0 AT3G20540 1110 / 0.0 polymerase I B, polymerase gamma 1 (.1.2) Potri.011G136900 [exp] 990 / 0 AT1G50840 1109 / 0.0 polymerase I A, polymerase gamma 2 (.1) Potri.018G036600 [exp] 82 / 1e-15 AT4G32700 2501 / 0.0 TEBICHI, helicases;ATP-dependent helicases;nucleic acid binding;ATP binding;DNA-directed DNA polymerases;DNA binding (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00476 [flax] [poplar] DNA_pol_A DNA polymerase family A
Representative CDS sequence Show only first row Show all	>Lus10040048 pacid=23173453 polypeptide=Lus10040048 locus=Lus10040048.g ID=Lus10040048.BGIv1.0 annot-version=v1.0 ATGCATATGGCTCGGTTGTTCAACTCAGCAAGGCGTACAGAAGGCGGATATTCTCTTGAATCTCTGACAGGCGATGAAAGGGTGATGTCTGGTGCTAAAT CATGCTATAAAGAGTTGATTGGCAAAGTGTCAATGAAAACTATTTTTGGCAAGAAAAAGTTGAAGAAAGATGGATCTGAAGGAAAAACTACAATAATTGC TTCTGTTGAAGAGCTTCAAAGAGAAGACCGGGAGTGCTGGATTTGTTATTCTGCCTTAGATGCAATAAGCACCTTGCAGCTTTACGAGAGCTTGAAAAAG CAACTCATGCAAAGGGAGTGGAAATGCTACGGGAGACCATTTTCTAATAGGAAGTCGATGTTTGACTTTTATCAGGAATATTGGCGTCCATTTGGTGAGC TTCTAGTTAAAATGGAAGACGAAGGTATGTTGGTTGATCGGGCATATCTTGCAGAGATAGAGAAAGTAGCAAAAGCAGAGCAAGAGATTGCTGGTAAGAG ATTCAGACATTGGGCATCAAAGTATTGTCCAGATGCCCAATTTATGAACATCGGAAGTGACACACAATTGCGTCAACTATTTTTTGGTGGTATTGCGAAC AGGAAAGACTGTTCCGTTACTCTCCCAGAATCAAGACTATTCCCAGTTCCAAATGTCGACAAGGTGATTGCAGAAGGAAAAAAGACAGCTACCAAATATC GTAATATTAAGCTGCATAAAATTGTTGCCAATGATCTACCCACTGAGTTGTTCACGGCCAGTGGTTGGCCGTCTCTCAGTGGCGATGCATTGAAGGCCAT GGCTGGGAAGGTTTCTGCAGACAGCTATTTCATGGATGATTTTGTTGACCCACAAACGGATGAAGATGATAATGATAATCCAGACTTGACAGAAGATTCC AGGATAGTATCAACTTCCCCTACGGATGTTGACATGTCTGCCTACGGGACAGCCTTGAGTGCATTTTCAACGCGCGAAGAAGGAATTGACGCTTGCCATG CCATTGCTTCTTTGTGTGAAGTTTGCTCCATTGATTCATTGATATCCAACTTTATTCTCCCTTTGCAGGAGAGTAACATATCAGGCAAGAATGGGCGCGT TCATTGTTCTCTGAATATCAATACAGAAACTGGGAGACTGTCTGCAAGAAGGCCAAATTTACAAAATCAGCCAGCTTTGGAAAAGGACCGGTACAAGATC CGTCAAGCATTTATAGCTACCCCTGGGAACTCCCTTATTGTTGCTGATTATGGACAGTTGGAACTAAGAATTCTTGCACACCTTGCTGGCTGTGAAAGCA TGTTAAGAGCTTTTGAAGCTGGCGGCGATTTCCATTCAAGAACAGCAATGAATATGTATCATCATATCCACGAGGCCATCGAGAGGAAGGACGTGCTTCT GGAGTGGTACTCCCAACCCGGTGAAGAGAAACCACCGGTTCCGCTATTGAAGGATCGTTTTGCTTCAGAAAGAAGGAAAGCTAAGATGCTTAACTTTTCT ATCGCTTATGGAAAAACTCCAGTGGGACTTGCACGGGATTGGAAGGTTTCGGTGGAGGAAGCTAAGGACACTGTTAATCTGTGGTACAAAGAGAGGCAAG AAGTGCTGAAATGGCAAGAAGCTCGTAAGAAAGAAGCTAATCAAACAGGATGTGTTCACACGCTGCTAGGACGGGCTCGCCATTTCCCACCAATGAAACA TATGAGTCGTGCTCAAAGAAATCATATTGAAAGGGCTGCTATAAACACACCCGTCCAGGGTAGTGCTGCGGATGTTGCTATGTGTGCTATGTTAGAGATA TCAAGAAATGAACGTTTAAAAGAACTAGGATGGACACTGCTTTTACAGGTTCACGATGAAGTGATATTAGAAGGACCGAGTGAGTCTGCTGAAGTTGCAA AAGCAATAGTAGTTGAATGCATGTCAAAACCATTTGGCGGCAAGAACGCTCTAAATGTTGACCTCTCCGTTGACGCCAAGTGTGCTCAAAACTGGTACGC AGCAAAGTAA
AA sequence Show only first row Show all	>Lus10040048 pacid=23173453 polypeptide=Lus10040048 locus=Lus10040048.g ID=Lus10040048.BGIv1.0 annot-version=v1.0 MHMARLFNSARRTEGGYSLESLTGDERVMSGAKSCYKELIGKVSMKTIFGKKKLKKDGSEGKTTIIASVEELQREDRECWICYSALDAISTLQLYESLKK QLMQREWKCYGRPFSNRKSMFDFYQEYWRPFGELLVKMEDEGMLVDRAYLAEIEKVAKAEQEIAGKRFRHWASKYCPDAQFMNIGSDTQLRQLFFGGIAN RKDCSVTLPESRLFPVPNVDKVIAEGKKTATKYRNIKLHKIVANDLPTELFTASGWPSLSGDALKAMAGKVSADSYFMDDFVDPQTDEDDNDNPDLTEDS RIVSTSPTDVDMSAYGTALSAFSTREEGIDACHAIASLCEVCSIDSLISNFILPLQESNISGKNGRVHCSLNINTETGRLSARRPNLQNQPALEKDRYKI RQAFIATPGNSLIVADYGQLELRILAHLAGCESMLRAFEAGGDFHSRTAMNMYHHIHEAIERKDVLLEWYSQPGEEKPPVPLLKDRFASERRKAKMLNFS IAYGKTPVGLARDWKVSVEEAKDTVNLWYKERQEVLKWQEARKKEANQTGCVHTLLGRARHFPPMKHMSRAQRNHIERAAINTPVQGSAADVAMCAMLEI SRNERLKELGWTLLLQVHDEVILEGPSESAEVAKAIVVECMSKPFGGKNALNVDLSVDAKCAQNWYAAK

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G20540		PolIB, POLGAMMA...	polymerase I B, polymerase gam...		Lus10040048 [exp]	0	1
AT3G20540		PolIB, POLGAMMA...	polymerase I B, polymerase gam...		Lus10019619 [exp]	2.2	0.9495
AT3G10690		GYRA	DNA GYRASE A (.1)		Lus10008940 [exp]	4.0	0.9443
AT4G38890			FMN-linked oxidoreductases sup...		Lus10035460 [exp]	5.5	0.9308
AT4G23940			FtsH extracellular protease fa...		Lus10023066 [exp]	5.7	0.9417
AT3G61690			nucleotidyltransferases (.1)		Lus10030265 [exp]	6.6	0.9415
AT2G28600			P-loop containing nucleoside t...		Lus10034162 [exp]	6.9	0.9130
AT4G11970			YTH family protein (.1.2.3)		Lus10007048 [exp]	8.2	0.9007
AT3G24320		CHM1, ATMSH1, C...	CHLOROPLAST MUTATOR, MUTL prot...		Lus10014462 [exp]	8.8	0.9050
AT5G04130		GYRB2	DNA GYRASE B2 (.1.2)		Lus10010428 [exp]	9.8	0.9257
AT1G24090			RNase H family protein (.1)		Lus10020869 [exp]	9.9	0.9109

Compare expression of checked genes

Lus10040048 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.