Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G20540 159 / 6e-42 PolIB, POLGAMMA1 polymerase I B, polymerase gamma 1 (.1.2) AT1G50840 152 / 2e-39 PolIA, POLGAMMA2 polymerase I A, polymerase gamma 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019619 [exp] 607 / 0 AT3G20540 1212 / 0.0 polymerase I B, polymerase gamma 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G421300 [exp] 177 / 5e-48 AT3G20540 1110 / 0.0 polymerase I B, polymerase gamma 1 (.1.2) Potri.011G136900 [exp] 171 / 8e-46 AT1G50840 1109 / 0.0 polymerase I A, polymerase gamma 2 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10040049 pacid=23173485 polypeptide=Lus10040049 locus=Lus10040049.g ID=Lus10040049.BGIv1.0 annot-version=v1.0 ATGGAGGTGAAAGAGATCTGCAGCACGACGGCGGCCTCCTTTTGCAGCAGCACCGCTGCTATTATCAAGCTGGGGAAATTAGCAGCAACAGCAGGAGGAG GAGGAGGAGGAGGTGAAGCGTTTACAGCTATGGGGATTTCTTCCACCGCCCACATTTATCCTTTCAGGCCTCTCCCTGTTTCTCCTTCTTATCTCAGGTT TTACCGCTCTTGCCCCTGCCTCTCTGCCGCTTCATCTCCTACTCCAGCTAATCGCGTTGCTGTCGCTGCTTATACAATTCCTTTCTCCCACCACAGATTC TGGAGACAGCTTCCTTCCGGTGTAGTTCTTAATCTTCGAAGAAGAGATGAGAAGCGTTATTTGGGTTCAGGAACTTATACCACTTCTACATATCTGGACA CTACAACCACCTACAAAGAGTCGAGAATGCAGTGGACCAAAGAGAGCAACTATGTACGTGAAAGTAGAAGTCGAGTTGCTCAGGATAACAGTGGCCATTT GCAAGATGGCCCCTCTTACTCGATGAATCATGCTGAATATCTCAAAATGAGAGCCGATGCTAAAGTGGAAAGTAGAGTGCAATTTAATGTCAGTACAGAT GGAGCTTCAGTGGCTGCTGATGGTTCAGCAATAACAAACAGAAGGAATAATGGTTTATCTTCATTGATTGTGGAAGAGAGAGCAAGAACGAATGGTTCAG TCAAGGTGGGTATGAATGGTTCAGCAGTTGGTCACAAAAAACCAAGTGGATTCTCTTCTGAGGCTGCCAGCAAGAGTTTCAAACCATTGGCACCAGATGT GAATGGTACTGCAACGAGAAGGCCAGATAGTTCCTCCTCAAAATCTGCAAAAGAGATGGCAAAAACTAATGGGTCATTGGCAAGTGAAGTGGTACGGCAC TCAGAAGGTTCACATTTTAGTAAAAGCAAGGGCAAAGGTGCTAATTACATGCCCAACGGAAAAATTGCTGCTGCTGCTGAGACTGCAGATGCTGCAAATG CTAAGGAATGCCAGACTGATATCCGCAACAGACTTATTAGTATCTCCAACAATGTTCTTGTTGTAGATAATGTATCCACTGCAAAAGCAGTTGTCAGTAA GCTTACTCATCAGTACAAGCACCTCGTCCATGCATGTGATACTGAGGTTTCCAATATTGATGTGAAGGTACAGACACCAATTGATCATGGAGAACTAATA TGTTTCAGTATATATTCTGGCCCTGAGGCTGATTATGGAAATGGTAAATCATGTATCTGGGTGGATGTACTTGACGGAGGTGGACAAGATATCTTGGCTG AATTCAATAAGTTTTTTGAAGATGAGTCCATTAAGAAGGTAAGTTACATTCCACCATCTTCAGTTGCACCTGAAATGGTCAGGTTCTCTTAA
AA sequence Show only first row Show all	>Lus10040049 pacid=23173485 polypeptide=Lus10040049 locus=Lus10040049.g ID=Lus10040049.BGIv1.0 annot-version=v1.0 MEVKEICSTTAASFCSSTAAIIKLGKLAATAGGGGGGGEAFTAMGISSTAHIYPFRPLPVSPSYLRFYRSCPCLSAASSPTPANRVAVAAYTIPFSHHRF WRQLPSGVVLNLRRRDEKRYLGSGTYTTSTYLDTTTTYKESRMQWTKESNYVRESRSRVAQDNSGHLQDGPSYSMNHAEYLKMRADAKVESRVQFNVSTD GASVAADGSAITNRRNNGLSSLIVEERARTNGSVKVGMNGSAVGHKKPSGFSSEAASKSFKPLAPDVNGTATRRPDSSSSKSAKEMAKTNGSLASEVVRH SEGSHFSKSKGKGANYMPNGKIAAAAETADAANAKECQTDIRNRLISISNNVLVVDNVSTAKAVVSKLTHQYKHLVHACDTEVSNIDVKVQTPIDHGELI CFSIYSGPEADYGNGKSCIWVDVLDGGGQDILAEFNKFFEDESIKKVSYIPPSSVAPEMVRFS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G20540		PolIB, POLGAMMA...	polymerase I B, polymerase gam...		Lus10040049 [exp]	0	1
AT3G20540		PolIB, POLGAMMA...	polymerase I B, polymerase gam...		Lus10019619 [exp]	1.7	0.9568
AT4G11970			YTH family protein (.1.2.3)		Lus10006706 [exp]	3.2	0.9465
					Lus10036489 [exp]	4.0	0.9471
AT2G24430	NAC	ANAC039, ANAC03...	Arabidopsis NAC domain contain...		Lus10004531 [exp]	4.2	0.9483
AT3G55160			unknown protein		Lus10007253 [exp]	6.8	0.9517
AT3G61170			Tetratricopeptide repeat (TPR)...		Lus10024936 [exp]	6.9	0.9064
AT1G06950		ATTIC110, TIC11...	ARABIDOPSIS THALIANA TRANSLOCO...		Lus10042232 [exp]	6.9	0.9326
AT2G39930		ATISA1, ISA1	ARABIDOPSIS THALIANA ISOAMYLAS...		Lus10017150 [exp]	7.9	0.9348
AT2G38770		EMB2765	EMBRYO DEFECTIVE 2765, P-loop ...		Lus10016352 [exp]	8.5	0.9427
AT1G06950		ATTIC110, TIC11...	ARABIDOPSIS THALIANA TRANSLOCO...		Lus10026424 [exp]	10.7	0.9263

Compare expression of checked genes

Lus10040049 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.