Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G20530 526 / 0 Protein kinase superfamily protein (.1) AT1G61860 454 / 7e-160 Protein kinase superfamily protein (.1) AT3G07070 438 / 6e-153 Protein kinase superfamily protein (.1) AT5G18610 440 / 2e-152 Protein kinase superfamily protein (.1.2) AT5G13160 437 / 6e-152 PBS1 avrPphB susceptible 1, Protein kinase superfamily protein (.1) AT5G02800 431 / 6e-151 CDL1 CDG1-like 1, Protein kinase superfamily protein (.1) AT3G24790 429 / 2e-150 Protein kinase superfamily protein (.1) AT4G13190 417 / 4e-145 Protein kinase superfamily protein (.1) AT1G07870 409 / 1e-141 Protein kinase superfamily protein (.1.2) AT2G28590 397 / 9e-137 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019621 [exp] 644 / 0 AT3G20530 536 / 0.0 Protein kinase superfamily protein (.1) Lus10011148 [exp] 622 / 0 AT3G20530 560 / 0.0 Protein kinase superfamily protein (.1) Lus10043050 [exp] 619 / 0 AT3G20530 561 / 0.0 Protein kinase superfamily protein (.1) Lus10015756 [exp] 450 / 4e-157 AT5G13160 732 / 0.0 avrPphB susceptible 1, Protein kinase superfamily protein (.1) Lus10041426 [exp] 441 / 8e-155 AT5G18610 582 / 0.0 Protein kinase superfamily protein (.1.2) Lus10033966 [exp] 445 / 2e-154 AT5G18610 805 / 0.0 Protein kinase superfamily protein (.1.2) Lus10012814 [exp] 444 / 5e-154 AT5G18610 807 / 0.0 Protein kinase superfamily protein (.1.2) Lus10011866 [exp] 441 / 7e-154 AT3G07070 556 / 0.0 Protein kinase superfamily protein (.1) Lus10040350 [exp] 437 / 9e-153 AT5G18610 569 / 0.0 Protein kinase superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G421400 [exp] 585 / 0 AT3G20530 587 / 0.0 Protein kinase superfamily protein (.1) Potri.011G137000 [exp] 563 / 0 AT3G20530 555 / 0.0 Protein kinase superfamily protein (.1) Potri.004G018500 [exp] 472 / 5e-167 AT3G20530 473 / 2e-167 Protein kinase superfamily protein (.1) Potri.011G000500 [exp] 456 / 1e-160 AT3G20530 481 / 2e-170 Protein kinase superfamily protein (.1) Potri.003G166900 [exp] 454 / 2e-158 AT5G13160 745 / 0.0 avrPphB susceptible 1, Protein kinase superfamily protein (.1) Potri.001G060800 [exp] 452 / 8e-158 AT5G13160 714 / 0.0 avrPphB susceptible 1, Protein kinase superfamily protein (.1) Potri.010G021500 [exp] 450 / 2e-156 AT5G18610 779 / 0.0 Protein kinase superfamily protein (.1.2) Potri.008G205700 [exp] 446 / 7e-155 AT5G18610 783 / 0.0 Protein kinase superfamily protein (.1.2) Potri.010G215100 [exp] 437 / 2e-153 AT5G18610 595 / 0.0 Protein kinase superfamily protein (.1.2) Potri.008G046500 [exp] 435 / 2e-152 AT5G18610 582 / 0.0 Protein kinase superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10040050 pacid=23173398 polypeptide=Lus10040050 locus=Lus10040050.g ID=Lus10040050.BGIv1.0 annot-version=v1.0 ATGAGTTGTTTCTCGTGTTGTTTGTCTGAAGAGAAAATCAACAGAAAGACATTGAAGAAGAGCATTAAGAATTACAAGGACACCAAGACTTTAGCATCGT TTGCTAACCTCTCCTTCAAAAGTGATAGCGGCAGGAGAAGGTACATAACAGAAGAAATCAAGAAAATTGGAAACAAAAACATATCCGCAAAGATATTCTC ATTCCGGGAATTGACAGTAGCAACTCAGAACTTCACACATGAAAAGATGATAGGGGAAGGTGGCTTTGGGAGGGTTTACAAGGGTCAAATTGCAGATAAG GATGTAGCAGTAAAGCAACTGGACAGAAATGGGTTTCAGGGGAACAGAGAATTCCTGGTGGAAGTTCTGATGTTGAGCCTTCTTCACCACTCCAACCTTG TGAATTTAGTTGGGTATTGTGCTGATGGTGACCAAAGAATCCTTGTTTATGAGTATATGCCCAATGGCTCTCTGGAAGACCACCTGCTTGATTTGCCAGA GGGAAAAGCTCCTTTGGATTGGAGTAGCAGGATGAAAGTGGCAGCTGGTGCAGCAAGAGGACTGGAGTACCTGCATGAGACAGCAGATCCACCAGTGATA TACCGTGACTTCAAAGCATCAAACATTCTATTAGATGCTGATTTCAACGCCAAACTATCTGATTTTGGGCTGGCCAAGCTCGGTCCAACAGGAGACAAGA CTCATGTCTCCACCAGGGTGATGGGAACTTATGGATATTGCGCCCCTGAGTATGCTTTGACAGGACAGCTCACATCTAAATCTGATGTATACAGCTTTGG AGTTGTCTTCTTAGAGATTATTACCGGAAGGAGAGTCATTGACAATTCAAGACCAACTGAAGAGCAGAATCTGGTCAATTGGGCAACACCATTACTTAAA GATAGGAACAAGTTTGATTTACTGGCAGACCCATTATTGGGAGGAAAAGGAAATTACCCTCAGAAGGGTCTTCATCAAGCATTAGCTGTAGCAGCAATGT GTCTCCAGGAGGAAGCTGCAATAAGGCCATTGATGAGTGATGTAGTGACGGCTCTCGAGTATCTAGCAATTAACAAAGACACTGCTCAAGGAGCTATAGA CATTGGATCTGAAGGATGCAACGATGAAGAAGAAGAAGAAGATCAGATTCAAGTTGATAGCTAA
AA sequence Show only first row Show all	>Lus10040050 pacid=23173398 polypeptide=Lus10040050 locus=Lus10040050.g ID=Lus10040050.BGIv1.0 annot-version=v1.0 MSCFSCCLSEEKINRKTLKKSIKNYKDTKTLASFANLSFKSDSGRRRYITEEIKKIGNKNISAKIFSFRELTVATQNFTHEKMIGEGGFGRVYKGQIADK DVAVKQLDRNGFQGNREFLVEVLMLSLLHHSNLVNLVGYCADGDQRILVYEYMPNGSLEDHLLDLPEGKAPLDWSSRMKVAAGAARGLEYLHETADPPVI YRDFKASNILLDADFNAKLSDFGLAKLGPTGDKTHVSTRVMGTYGYCAPEYALTGQLTSKSDVYSFGVVFLEIITGRRVIDNSRPTEEQNLVNWATPLLK DRNKFDLLADPLLGGKGNYPQKGLHQALAVAAMCLQEEAAIRPLMSDVVTALEYLAINKDTAQGAIDIGSEGCNDEEEEEDQIQVDS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G20530			Protein kinase superfamily pro...		Lus10040050 [exp]	0	1
AT5G53550		ATYSL3, YSL3	YELLOW STRIPE like 3 (.1.2)		Lus10008836 [exp]	3.9	0.8504
AT5G54160		ATOMT1	O-methyltransferase 1 (.1)		Lus10016939 [exp]	5.0	0.7602
AT2G30690			Protein of unknown function, D...		Lus10014743 [exp]	7.9	0.7512
AT4G24972		TPD1	tapetum determinant 1 (.1)		Lus10016744 [exp]	11.1	0.7638
AT5G55470		ATNHX3	Na+/H+ \(sodium hydrogen\) exc...		Lus10016583 [exp]	13.1	0.7485
AT3G48190		PIG1, ATATM, AT...	pcd in male gametogenesis 1, A...		Lus10043340 [exp]	15.9	0.7414
AT5G53550		ATYSL3, YSL3	YELLOW STRIPE like 3 (.1.2)		Lus10022360 [exp]	17.0	0.7926
AT1G64300			Protein kinase family protein ...		Lus10041114 [exp]	17.6	0.7194
AT4G29100	bHLH	bHLH068	basic helix-loop-helix (bHLH) ...		Lus10034940 [exp]	24.2	0.7558
AT3G22750			Protein kinase superfamily pro...		Lus10039357 [exp]	29.2	0.7341

Compare expression of checked genes

Lus10040050 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.