Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G27020 829 / 0 unknown protein AT5G54870 798 / 0 unknown protein AT1G70160 686 / 0 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032644 [exp] 900 / 0 AT4G27020 868 / 0.0 unknown protein Lus10043107 [exp] 884 / 0 AT4G27020 849 / 0.0 unknown protein Lus10010721 [exp] 697 / 0 AT1G70160 880 / 0.0 unknown protein Lus10029209 [exp] 693 / 0 AT1G70160 872 / 0.0 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G137700 [exp] 873 / 0 AT4G27020 894 / 0.0 unknown protein Potri.001G424500 [exp] 849 / 0 AT4G27020 879 / 0.0 unknown protein Potri.010G036900 [exp] 698 / 0 AT1G70160 852 / 0.0 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10040054 pacid=23173451 polypeptide=Lus10040054 locus=Lus10040054.g ID=Lus10040054.BGIv1.0 annot-version=v1.0 ATGGAGCCATTTTCCACTGGGAACCCCTCCTCGATCTTCTTCTTTTTCCTCTTCCTCGTTTACGCCACCGGAGTTGTAAAATCACAGTTTCACCCACGAG ACGTGCTGCCGCTGTTACCCAAGGAAGTTTCGTGGCCAATCCTTGATCATCTCAACAGTGCGGTGGACCTTCTACCGACATTTGTGGGTGCTGCGTCGTC TCCCGAGAACGCAGTGGAGTGGAAAGGCGCTTGCTTCTATAAGAGCCTGGCTTGGATGGAGTTCCACAACAAGACCGGGACTCAATTTGGCGGAGGCACT CTTCACATTAAGGTCAGTGACGCTCATAGCTGGACATGTATGGATCTTTACCTATTTGCAACCCCATACCGCGCCACTTGGGATTACTATTTTCTTTCAC GGGAGCATACTTTGGATTTCAAAGAGTGGGAAGGACGAGCCGAGTACGAATTTGTGAAAAACAAAGGGGTCTCAATTTTTCTCATGCAAGCTGGAATGCT GGGTACCCTTCGTGGACTGTGGGATGTCTTCCCCTTATTCACTAATACTAAATGGGGTGAGAATGCTAACCTTGCTTTCCTTAAGAAGCACATGGGTGCA AACTTTGAGCCTCGTCCTCAGCCCTGGGTCACCAATATAACTGTTAATGAGATTTGCTCTGGAGACTTTCTCGCAATATCAAAGATTCGTGGGAGGTGGG GTGGTTTTGAAACGCTAGAGAAGTGGGTTACTGGAGCTTATGCTGGCCATACTGCTGTTTGCTTGAGGGATTCCCAAGGGAAACTATGGGTTGGTGAATC AGGACATGAGAATGAAGAGGGAGAAGATATCATTGCTATAATACCTTGGGAGGAATGGTGGGAGTTTGAGCTGAATGAAGATGATTCGAATCCCCATATT GCTTTGCTTCCTTTACACCCTGAAATCCGAGCCAAGTTTAATGAGACAGCTGCTTGGGAATACGCGTTAAGCATGAATGGAAAACCTTATGGATACCATA ACATGATATTTAGCTGGATAGATACTATCGGCGGAAATTTTCCACCTCCACTGGATGCTCATCTGGTAGCTTCTGTGATGACCGTTTGGAGTCAGATGCA ACCTACATATGCCGCAAATATGTGGAGTGAAGCCTTGAACAAGCGACTTGGAACTAAGGGGCTTGATTTGCCTGCCATTATTGTAGAAACTGAGAAGCAT GGTTCATCCTTTTCGGAATTGTTAACAATTCCAGAACAAGATGACTGGTTGTATTCTGATGGGAAGTCTACCTCATGTGTTGCTTTTATTCTTGAAATGT ACAAGGAAGCAGGTCTGTTTGACCCGTACTCCAGCTCCATACAAGTAACTGAGTTCACGATCAAAGATGCTTACACCCTCCGCTTCTTTGAGACCAATGT AAGTCGTTTGCCGTCATGGTGCAATGATGGGGATGATGTTAAACTTCCCTTCTGCCAGATTCGGGGCAAGTATCGAATGGAATTACCAGAATACAACACG ATGGATCCTTATCCCCATATGAATGAAAGGTGTCCATCTCTTCCCCCAGACTACTTCAGGCCGAAGAATTGCTGA
AA sequence Show only first row Show all	>Lus10040054 pacid=23173451 polypeptide=Lus10040054 locus=Lus10040054.g ID=Lus10040054.BGIv1.0 annot-version=v1.0 MEPFSTGNPSSIFFFFLFLVYATGVVKSQFHPRDVLPLLPKEVSWPILDHLNSAVDLLPTFVGAASSPENAVEWKGACFYKSLAWMEFHNKTGTQFGGGT LHIKVSDAHSWTCMDLYLFATPYRATWDYYFLSREHTLDFKEWEGRAEYEFVKNKGVSIFLMQAGMLGTLRGLWDVFPLFTNTKWGENANLAFLKKHMGA NFEPRPQPWVTNITVNEICSGDFLAISKIRGRWGGFETLEKWVTGAYAGHTAVCLRDSQGKLWVGESGHENEEGEDIIAIIPWEEWWEFELNEDDSNPHI ALLPLHPEIRAKFNETAAWEYALSMNGKPYGYHNMIFSWIDTIGGNFPPPLDAHLVASVMTVWSQMQPTYAANMWSEALNKRLGTKGLDLPAIIVETEKH GSSFSELLTIPEQDDWLYSDGKSTSCVAFILEMYKEAGLFDPYSSSIQVTEFTIKDAYTLRFFETNVSRLPSWCNDGDDVKLPFCQIRGKYRMELPEYNT MDPYPHMNERCPSLPPDYFRPKNC

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G27020			unknown protein		Lus10040054 [exp]	0	1
AT4G32600			RING/U-box superfamily protein...		Lus10033075 [exp]	8.5	0.6878
AT5G39040		AtALS1, ABCB27,...	ARABIDOPSIS THALIANA TRANSPORT...		Lus10007987 [exp]	10.5	0.6348
AT1G75130		CYP721A1	"cytochrome P450, family 721, ...		Lus10010801 [exp]	19.6	0.6243
AT1G01040		SIN1, EMB76, EM...	SHORT INTEGUMENTS 1, EMBRYO DE...		Lus10005141 [exp]	23.7	0.6563
AT5G18310			unknown protein		Lus10021984 [exp]	24.0	0.6147
AT2G23470		RUS4	ROOT UV-B SENSITIVE 4, Protein...		Lus10022474 [exp]	26.5	0.5971
AT2G01980		ATSOS1, SOS1, A...	ARABIDOPSIS SALT OVERLY SENSIT...		Lus10013798 [exp]	28.7	0.6233
AT3G45600		TET3	tetraspanin3 (.1)		Lus10038473 [exp]	42.4	0.6170
AT1G47128		RD21A, RD21	RESPONSIVE TO DEHYDRATION 21A,...		Lus10018735 [exp]	47.0	0.6136
AT5G43130		TAF4, TAF4B	TBP-associated factor 4B, TBP-...		Lus10007763 [exp]	50.3	0.5958

Compare expression of checked genes

Lus10040054 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.