Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G36110 318 / 8e-104 CYP716A1 "cytochrome P450, family 716, subfamily A, polypeptide 1", cytochrome P450, family 716, subfamily A, polypeptide 1 (.1) AT2G42850 308 / 8e-100 CYP718 "cytochrome P450, family 718", cytochrome P450, family 718 (.1) AT5G45340 229 / 7e-70 CYP707A3 "cytochrome P450, family 707, subfamily A, polypeptide 3", cytochrome P450, family 707, subfamily A, polypeptide 3 (.1.2) AT4G19230 229 / 1e-69 CYP707A1 "cytochrome P450, family 707, subfamily A, polypeptide 1", cytochrome P450, family 707, subfamily A, polypeptide 1 (.1.2) AT5G05690 226 / 3e-68 CBB3, DWF3, CYP90A1, CYP90A, CPD DWARF 3, CYTOCHROME P450 90A1, CONSTITUTIVE PHOTOMORPHOGENIC DWARF, CABBAGE 3, Cytochrome P450 superfamily protein (.1.2.3) AT2G29090 223 / 2e-67 CYP707A2 "cytochrome P450, family 707, subfamily A, polypeptide 2", cytochrome P450, family 707, subfamily A, polypeptide 2 (.1.2) AT4G36380 223 / 1e-66 ROT3 ROTUNDIFOLIA 3, Cytochrome P450 superfamily protein (.1) AT3G13730 216 / 2e-64 CYP90D1 "cytochrome P450, family 90, subfamily D, polypeptide 1", cytochrome P450, family 90, subfamily D, polypeptide 1 (.1) AT3G19270 210 / 3e-62 CYP707A4 "cytochrome P450, family 707, subfamily A, polypeptide 4", cytochrome P450, family 707, subfamily A, polypeptide 4 (.1) AT1G19630 202 / 2e-59 CYP722A1 "cytochrome P450, family 722, subfamily A, polypeptide 1", cytochrome P450, family 722, subfamily A, polypeptide 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010940 [exp] 295 / 1e-94 AT2G42850 571 / 0.0 "cytochrome P450, family 718", cytochrome P450, family 718 (.1) Lus10014850 [exp] 234 / 2e-71 AT5G05690 679 / 0.0 DWARF 3, CYTOCHROME P450 90A1, CONSTITUTIVE PHOTOMORPHOGENIC DWARF, CABBAGE 3, Cytochrome P450 superfamily protein (.1.2.3) Lus10018898 [exp] 230 / 1e-69 AT5G45340 301 / 3e-97 "cytochrome P450, family 707, subfamily A, polypeptide 3", cytochrome P450, family 707, subfamily A, polypeptide 3 (.1.2) Lus10040193 [exp] 227 / 1e-68 AT5G05690 687 / 0.0 DWARF 3, CYTOCHROME P450 90A1, CONSTITUTIVE PHOTOMORPHOGENIC DWARF, CABBAGE 3, Cytochrome P450 superfamily protein (.1.2.3) Lus10028594 [exp] 227 / 1e-68 AT5G45340 299 / 1e-96 "cytochrome P450, family 707, subfamily A, polypeptide 3", cytochrome P450, family 707, subfamily A, polypeptide 3 (.1.2) Lus10034768 [exp] 222 / 1e-66 AT5G45340 731 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 3", cytochrome P450, family 707, subfamily A, polypeptide 3 (.1.2) Lus10035685 [exp] 220 / 4e-66 AT4G19230 714 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 1", cytochrome P450, family 707, subfamily A, polypeptide 1 (.1.2) Lus10042652 [exp] 220 / 7e-66 AT3G19270 647 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 4", cytochrome P450, family 707, subfamily A, polypeptide 4 (.1) Lus10033308 [exp] 215 / 3e-64 AT5G45340 732 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 3", cytochrome P450, family 707, subfamily A, polypeptide 3 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G001300 [exp] 518 / 0 AT5G36110 332 / 2e-109 "cytochrome P450, family 716, subfamily A, polypeptide 1", cytochrome P450, family 716, subfamily A, polypeptide 1 (.1) Potri.004G017800 [exp] 512 / 7e-180 AT5G36110 317 / 1e-103 "cytochrome P450, family 716, subfamily A, polypeptide 1", cytochrome P450, family 716, subfamily A, polypeptide 1 (.1) Potri.011G001500 [exp] 506 / 3e-177 AT5G36110 331 / 8e-109 "cytochrome P450, family 716, subfamily A, polypeptide 1", cytochrome P450, family 716, subfamily A, polypeptide 1 (.1) Potri.004G017700 [exp] 493 / 3e-172 AT5G36110 304 / 2e-98 "cytochrome P450, family 716, subfamily A, polypeptide 1", cytochrome P450, family 716, subfamily A, polypeptide 1 (.1) Potri.004G017633 [exp] 489 / 1e-170 AT5G36110 301 / 3e-97 "cytochrome P450, family 716, subfamily A, polypeptide 1", cytochrome P450, family 716, subfamily A, polypeptide 1 (.1) Potri.011G137950 [exp] 456 / 6e-159 AT5G36110 261 / 7e-83 "cytochrome P450, family 716, subfamily A, polypeptide 1", cytochrome P450, family 716, subfamily A, polypeptide 1 (.1) Potri.001G425675 [exp] 432 / 6e-150 AT2G42850 246 / 4e-77 "cytochrome P450, family 718", cytochrome P450, family 718 (.1) Potri.012G115000 [exp] 385 / 8e-130 AT5G36110 295 / 7e-95 "cytochrome P450, family 716, subfamily A, polypeptide 1", cytochrome P450, family 716, subfamily A, polypeptide 1 (.1) Potri.019G057901 [exp] 384 / 4e-129 AT5G36110 279 / 2e-88 "cytochrome P450, family 716, subfamily A, polypeptide 1", cytochrome P450, family 716, subfamily A, polypeptide 1 (.1) Potri.011G137800 [exp] 337 / 2e-113 AT5G36110 157 / 1e-44 "cytochrome P450, family 716, subfamily A, polypeptide 1", cytochrome P450, family 716, subfamily A, polypeptide 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10040055 pacid=23173544 polypeptide=Lus10040055 locus=Lus10040055.g ID=Lus10040055.BGIv1.0 annot-version=v1.0 ATGGAGACGCTTTTGATGACAACTCTGATCGGCCTTCTATCCACCATCTTTCTTCTCATCGTGAAATTGAGACCAAAGCCATACAACAACAGCAGTAATC TTCCGCCAGGGTGGCTGGGAATTCCAGTGATAGGGCAGAGCCTACAACTGCTGTGGGCGATGCGATCCAACACCGCTGAGAAATTTCTGGAACAGAGGAT TCTTAAGTACGGCCCAATCTCAAAGCTAAGCCTTTTCGGGAAACCCACGGTGTTCATCCACGGTCAGGCTGCAAACAAGCTAATCTTCACTGGGAGCGGG ATGGGAAATAGCCAGACCAAGTCAGTGACGACTATATTGGGAGACAAGAACCTGCTGGAGCTTAGTGGAGAAGAACACAAGAGAGTGAGAGGAGCTATGG TTCCCTTCTTGAAAGCAGAGTCGTTGAAGCAGTACGTTGGGAAGATGGACGAGGAAGTCAGGCTCCATATCCGCACTCACTGGAAAGGGAAGCACCAGGT TCAGGTACTGCCGCTGATGAAGGTGCTGACATTCGACATTATATGCAGCCTACTGTTCGGGATCGCAAGAGGAAGCAGGAGAGACGAGCTGGTGCAGCAT TTCCAGGACATGATAGCTGGAATGTGGTCGATCCCACTTGATTTGCCATTCACACGCTACAACCGCAGCATCGCAGCTAGCTCCAAAGTTGATGCTATTC TCAAAGACCTCATCGCCCACAAAATATCCAAACTTGATTCTTCTTCTCCCCAAGACCTCATCACTTCTTTAGTCAACAACAAAAGTAGTATGTCAGGCGT GATGATGATGAGTGAGAGGGAGATACTGGATAACGTCAAGCTAGTGATGACCGCAGGCCACGACACTTCCTCTGCTGTCATCACTCTTATCATGCGCCTC TTGTCCACCCAGCCTCAAGTTTACAACGCTCTTCTTCAAGAGCAGGACGAGATACGGAACAGCAAGGGTGAAGGAGGAGAAGCATTGACATGGGAAGATC TTGGAAAGATGAAGTACACATGGAGGGTAGCCCAAGAGACTATGAGAATGTATCCTCCAATCTTTGGCGGATTCAGGGTTGCTCTTCAAGATATTCACTT CGAAGGCTACCTTATCCCCAAAGGATGGCAAATTTTCTGGGCTTCAGCTATGACTCACATGGACAGCACCATATTCCCAGAACCCGACAAGTTCGAACCT GCAAGATTCGACAACCCAGCCTCAGTCCCTCCATACTGCTACATTCCTTTTGGAGGAGGTGCCCGGATATGTCCTGGATATGAGTTTGCCAAAGTTGAAA TCCTTGTCACCATTCACTATCTCGTCACTCAGTTTACCTGGAAAATGTGTGCAGACAACCGGTTTATTAGGGATCCAATGCCGGTTCCAACCAAGGGATT GCCAATCACTATCCAGCCTAGGAACACAAATTCCACTTTCTAG
AA sequence Show only first row Show all	>Lus10040055 pacid=23173544 polypeptide=Lus10040055 locus=Lus10040055.g ID=Lus10040055.BGIv1.0 annot-version=v1.0 METLLMTTLIGLLSTIFLLIVKLRPKPYNNSSNLPPGWLGIPVIGQSLQLLWAMRSNTAEKFLEQRILKYGPISKLSLFGKPTVFIHGQAANKLIFTGSG MGNSQTKSVTTILGDKNLLELSGEEHKRVRGAMVPFLKAESLKQYVGKMDEEVRLHIRTHWKGKHQVQVLPLMKVLTFDIICSLLFGIARGSRRDELVQH FQDMIAGMWSIPLDLPFTRYNRSIAASSKVDAILKDLIAHKISKLDSSSPQDLITSLVNNKSSMSGVMMMSEREILDNVKLVMTAGHDTSSAVITLIMRL LSTQPQVYNALLQEQDEIRNSKGEGGEALTWEDLGKMKYTWRVAQETMRMYPPIFGGFRVALQDIHFEGYLIPKGWQIFWASAMTHMDSTIFPEPDKFEP ARFDNPASVPPYCYIPFGGGARICPGYEFAKVEILVTIHYLVTQFTWKMCADNRFIRDPMPVPTKGLPITIQPRNTNSTF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G36110		CYP716A1	"cytochrome P450, family 716, ...		Lus10040055 [exp]	0	1
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Lus10002176 [exp]	12.2	0.7041
AT5G01370		ACI1	ALC-interacting protein 1 (.1)		Lus10001252 [exp]	18.7	0.6794
AT5G60440	MADS	AGL62	AGAMOUS-like 62 (.1)		Lus10003481 [exp]	24.1	0.6734
AT3G07070			Protein kinase superfamily pro...		Lus10022799 [exp]	27.7	0.6445
AT4G16730		AtTPS02	terpene synthase 02 (.1)		Lus10006357 [exp]	28.7	0.6715
AT5G50600		ATHSD1	hydroxysteroid dehydrogenase 1...		Lus10001511 [exp]	30.6	0.6643
AT5G67360		ARA12	Subtilase family protein (.1)		Lus10027891 [exp]	33.7	0.6611
AT1G31770		ABCG14	ATP-binding cassette G14, ATP-...		Lus10033315 [exp]	34.8	0.5555
AT4G35500			Protein kinase superfamily pro...		Lus10016690 [exp]	36.4	0.6611
AT3G16857	GARP	ARR1	response regulator 1 (.1.2)		Lus10039345 [exp]	38.9	0.6611

Compare expression of checked genes

Lus10040055 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.