Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035107 [exp] 336 / 4e-120 ND / Lus10017044 [exp] 321 / 2e-112 ND / Lus10003428 [exp] 319 / 9e-112 ND / Lus10005604 [exp] 307 / 2e-107 ND / Lus10022127 [exp] 305 / 2e-107 ND / Lus10032803 [exp] 302 / 2e-105 ND / Lus10000774 [exp] 253 / 3e-86 ND / Lus10039943 [exp] 249 / 4e-84 ND / Lus10008258 [exp] 246 / 1e-83 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0125 [flax] [poplar] Peptidase_CA PF02338 [flax] [poplar] OTU OTU-like cysteine protease
Representative CDS sequence Show only first row Show all	>Lus10040057 pacid=23173526 polypeptide=Lus10040057 locus=Lus10040057.g ID=Lus10040057.BGIv1.0 annot-version=v1.0 ATGCACCCGGTACTTGGTGATGTGTTTAACTCACGTGGGGATGGACATTGCGGATTTCGGTGCATTTCATACATAGTATCGGGCGGTGACGATAGCCAGT ATGTGGACATGCGGAGGCGTCTAATGGAACATGTCACAATGAACTGGTATGAACTTTACAGTAATGTCTATTCCACTGACTTAAACGGCGTCATTCACCG GTTGGGTTGGCTATGGGAAACTCCATGTGATGAAGCATGGTGGTTTTGGAATGTGGATCTTTTGGGGTATGCCACCATGTTTAACTGGACTTTCGTTGTC TTCGGACCCGGACTTCGAGGGGTACCTTATGGGGAGACTTACCTACCGTTGATAGTAGAAGAAGGCACAACGGCACCACTAGGTGTGTCGTATATCGTTT GCACCGGGAATCATTGGGTCGTACTCATGTTGGATGATGCTATTCCGGTGTTACCTATCCCGACAAGACCGCGCCAAACAAATGTGGGAACATGA
AA sequence Show only first row Show all	>Lus10040057 pacid=23173526 polypeptide=Lus10040057 locus=Lus10040057.g ID=Lus10040057.BGIv1.0 annot-version=v1.0 MHPVLGDVFNSRGDGHCGFRCISYIVSGGDDSQYVDMRRRLMEHVTMNWYELYSNVYSTDLNGVIHRLGWLWETPCDEAWWFWNVDLLGYATMFNWTFVV FGPGLRGVPYGETYLPLIVEEGTTAPLGVSYIVCTGNHWVVLMLDDAIPVLPIPTRPRQTNVGT

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10040057 [exp]	0	1
					Lus10005604 [exp]	13.5	0.7702
					Lus10003428 [exp]	17.0	0.7713
AT3G48770			DNA binding;ATP binding (.1)		Lus10004567 [exp]	26.2	0.7599
AT4G02715			unknown protein		Lus10042605 [exp]	39.7	0.7182
AT3G47570			Leucine-rich repeat protein ki...		Lus10037889 [exp]	40.1	0.7010
AT1G13610			alpha/beta-Hydrolases superfam...		Lus10019205 [exp]	57.7	0.7151
					Lus10035107 [exp]	96.4	0.6764
AT1G18640		PSP	3-phosphoserine phosphatase (....		Lus10021156 [exp]	113.3	0.6357
AT3G51240		TT6, F3'H, F3H	TRANSPARENT TESTA 6, flavanone...		Lus10041913 [exp]	161.3	0.6139
AT3G48410			alpha/beta-Hydrolases superfam...		Lus10004881 [exp]	166.9	0.6255

Compare expression of checked genes

Lus10040057 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.