Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G55060 717 / 0 unknown protein AT5G58510 144 / 2e-35 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032631 [exp] 859 / 0 AT5G55060 643 / 0.0 unknown protein Lus10043118 [exp] 855 / 0 AT5G55060 630 / 0.0 unknown protein Lus10000118 [exp] 390 / 5e-132 AT5G55060 319 / 1e-106 unknown protein Lus10021546 [exp] 328 / 6e-107 AT5G55060 170 / 3e-48 unknown protein Lus10031287 [exp] 150 / 3e-37 AT5G58510 1122 / 0.0 unknown protein Lus10031857 [exp] 101 / 7e-23 AT5G58510 468 / 2e-158 unknown protein Lus10020371 [exp] 57 / 3e-08 AT4G26680 241 / 3e-75 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10031851 [exp] 43 / 0.0004 AT5G58510 109 / 2e-27 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G089300 [exp] 840 / 0 AT5G55060 770 / 0.0 unknown protein Potri.009G076000 [exp] 129 / 8e-31 AT5G58510 1237 / 0.0 unknown protein Potri.001G280832 [exp] 56 / 1e-08 AT5G58510 164 / 3e-47 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10040061 pacid=23173506 polypeptide=Lus10040061 locus=Lus10040061.g ID=Lus10040061.BGIv1.0 annot-version=v1.0 ATGGAGTCACCTTCTTTTGTCACCAAAGCAAGGACCGCCTTCCATTCTGCCGCAGCTCGAGCCGAGCGCGTCCTCACCGATTTTAAATCTGATCGACCAG ATGCGGACAACAAGCATTCGCCGAGGGAACAACGGAACGGGCAGCCTGATAATAATCAGTCTCCGGAAAACGACAGCAAATCCAAGAGCAGCAATGCAGG GAAGCACATAAGGTGGAAACCCGCACCTATAGGAATAAAGCAAGATTGGCAAGATCGATTCAAAAATATTAGAATAGGAAAGAAAGGAGATGACAGCCCA ACAGAAAAAGTTGACGATCCAACCATGGCGCTTGGATTTTATGATGAGAATTTGTACATACTGAACATGAAAAATGATGCCGAGACCAAGACTTCACAAG TACCTTATATAGTAGAAAGATTAAAAGCTACCAGTCCAGACAACATTCCTCCAACATCTGTCATGAAGCAATTGGCAGTTGCTATCGATGCGGGCAAGAA GTACAAGTCAATAAAAGATTTTGTGACGTTTTCTGGAAGTTCTTCACCAATCAGAGAGAGAGCAAGCTTAAGTCTTGCTGCTATGAAGTCACTGGTGCTT CGTGACAAGGATGATAAGCTCACATCCGAGTTTGAGAACAGTGAGAAGGTTATGTCCATCATTCAGTCTTTGTTCAGTGAAGAGGCAGACTTCCTCAGGA GGAACATTGGCTGTAGCGCAGAGTCATTATCATTTATCAAAGACATTCATGGTGCACCTCCTGAAAGCTTCCTCGTAAAGCTATCTGAAGTAATTGGAAG TTTTAAAACATTGCGGAATATGGCTATCTTGTGGTGCAAAGCTGTTGCTGAACTGAGAAGAATCTGGTCTGAAGAACTCCATATACCAGGCATCCCTCTG GATGAGTGTCTAGATCTTCATTCATGCCTTTTGTGCCAGCAGTTTCAAGTTATCAATTGCTGTGTTTCCAGGAAAAAGCGCAATGCGCTTGCTTCTGAAT CACTGGAGGCTGTATTGAAGGATGCCAGTACATTTGAAGACTCTGCTGCGGGTGCAAATGCTCCTGGCCATTTATTATATGCCAAAACAAGCAGTGGAGA ACTTGTTCTTCGGCTTGGTGCCTGTTCCAAGGCTCCTAATCTGTTCATGCTGGAAACTGGTGAACCAATATACTCTCCTATCTCTCAGGAGGGACCTTTA CTTACTGAAGATGTTATCAAAGAAACAGAAGAGTTTATACTTCGAACTGGGAGTGTTGGTGCTGGGTGTTCTCAATTACTGTCTGACATGCAAGGTTTTA AGGTAGGGCCAGTCAACAATGCTGCAAATCCTGGCTGTATATTAGAAGATTTTGTGAGATGGCATTCGCCTCCTGACTGGACAGATAGTGAGCCCACTAA TGAGGCTAATGATGAGTCTACTTCAGATGTGGGCAATCCATCTTCCTCAAGAGGTTACTTAAGTAGTCGAATGCAAAAAGAAGGAAATTTGTGGCGTGAA CTGTGGGAAACATCTAAGCCGGTACCAGCTGTTAAACAGGCTCCCCTTTTTGACGAGGATTTGGCAGTCGAGGGTATACTAAATCACTTGGAGAATATTC ACCCTTGTGAGCTTTTTGAACAGTTATTCATTTCATTGCTTGGCCTGGGAACTCTAATGGCGGAGGGAAAGCTATCTAGCAACGATGATTTGTCGAAGCT ATTTTATGAATGCAAAGAATATATTGTTGTCACTTGTCAAGGAAGGCCTTGGAGTGAAAAAGTGGATGACCTTTGCCAGGTGTATGAAACAATGGAGGCG ATGCTACTGAATCCTGAAGAAGTTGTAAAGGCGATGAAGCAGGCTGATGATGTAAACACACCTGGATCCGCAAACAAGCGTAGTAGCTTTCTGAAACTGG GCTTGAACTTTGGCATAAAGGAAAGGAACCAGAAAAGACCATCTCCGCGATGTGAAAATAGTTCTGAAGAAACACCCGTGAAGCAGCCCTTCTCTAACTT CTTTGAGGGGAAGTCGTTCTTGTTCTCCAAGAACAAGCCTCCGAAGCCAGGTGGGGCTTCATCTCCTGGCGACAAAACCCCTTCAGCCGAGGAGAACGAT TGGACACTGGTTTGA
AA sequence Show only first row Show all	>Lus10040061 pacid=23173506 polypeptide=Lus10040061 locus=Lus10040061.g ID=Lus10040061.BGIv1.0 annot-version=v1.0 MESPSFVTKARTAFHSAAARAERVLTDFKSDRPDADNKHSPREQRNGQPDNNQSPENDSKSKSSNAGKHIRWKPAPIGIKQDWQDRFKNIRIGKKGDDSP TEKVDDPTMALGFYDENLYILNMKNDAETKTSQVPYIVERLKATSPDNIPPTSVMKQLAVAIDAGKKYKSIKDFVTFSGSSSPIRERASLSLAAMKSLVL RDKDDKLTSEFENSEKVMSIIQSLFSEEADFLRRNIGCSAESLSFIKDIHGAPPESFLVKLSEVIGSFKTLRNMAILWCKAVAELRRIWSEELHIPGIPL DECLDLHSCLLCQQFQVINCCVSRKKRNALASESLEAVLKDASTFEDSAAGANAPGHLLYAKTSSGELVLRLGACSKAPNLFMLETGEPIYSPISQEGPL LTEDVIKETEEFILRTGSVGAGCSQLLSDMQGFKVGPVNNAANPGCILEDFVRWHSPPDWTDSEPTNEANDESTSDVGNPSSSRGYLSSRMQKEGNLWRE LWETSKPVPAVKQAPLFDEDLAVEGILNHLENIHPCELFEQLFISLLGLGTLMAEGKLSSNDDLSKLFYECKEYIVVTCQGRPWSEKVDDLCQVYETMEA MLLNPEEVVKAMKQADDVNTPGSANKRSSFLKLGLNFGIKERNQKRPSPRCENSSEETPVKQPFSNFFEGKSFLFSKNKPPKPGGASSPGDKTPSAEEND WTLV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G55060			unknown protein		Lus10040061 [exp]	0	1
AT1G02860		BAH1, NLA	nitrogen limitation adaptation...		Lus10030375 [exp]	1.0	0.9599
AT5G54840		ATSGP1	Ras-related small GTP-binding ...		Lus10040044 [exp]	2.4	0.9542
AT4G24740		AME1, AFC2	FUS3-complementing gene 2 (.1....		Lus10019458 [exp]	2.8	0.9543
AT5G54840		ATSGP1	Ras-related small GTP-binding ...		Lus10019615 [exp]	4.7	0.9457
AT5G55860			Plant protein of unknown funct...		Lus10016626 [exp]	5.5	0.9465
AT5G49710			unknown protein		Lus10015965 [exp]	6.9	0.9541
AT3G27020		YSL6	YELLOW STRIPE like 6 (.1)		Lus10032024 [exp]	7.1	0.9523
AT4G32160			Phox (PX) domain-containing pr...		Lus10001496 [exp]	7.3	0.9403
AT4G39370		UBP27	ubiquitin-specific protease 27...		Lus10033528 [exp]	7.7	0.9265
AT3G59660			C2 domain-containing protein /...		Lus10025600 [exp]	8.2	0.9406

Compare expression of checked genes

Lus10040061 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.