Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G05170 647 / 0 Galactosyltransferase family protein (.1.2) AT2G32430 623 / 0 Galactosyltransferase family protein (.1) AT4G26940 611 / 0 Galactosyltransferase family protein (.1.2) AT1G32930 521 / 0 Galactosyltransferase family protein (.1) AT1G77810 511 / 0 Galactosyltransferase family protein (.1.2) AT1G11730 509 / 0 Galactosyltransferase family protein (.1) AT1G33430 482 / 2e-170 Galactosyltransferase family protein (.1.2) AT1G22015 465 / 1e-163 DD46 Galactosyltransferase family protein (.1) AT5G53340 247 / 5e-79 Galactosyltransferase family protein (.1.2) AT4G32120 225 / 2e-70 Galactosyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021538 [exp] 784 / 0 AT1G05170 610 / 0.0 Galactosyltransferase family protein (.1.2) Lus10031567 [exp] 572 / 0 AT1G05170 633 / 0.0 Galactosyltransferase family protein (.1.2) Lus10027185 [exp] 571 / 0 AT1G05170 624 / 0.0 Galactosyltransferase family protein (.1.2) Lus10015107 [exp] 570 / 0 AT1G05170 639 / 0.0 Galactosyltransferase family protein (.1.2) Lus10039657 [exp] 551 / 0 AT1G05170 607 / 0.0 Galactosyltransferase family protein (.1.2) Lus10006933 [exp] 531 / 0 AT1G77810 602 / 0.0 Galactosyltransferase family protein (.1.2) Lus10024750 [exp] 530 / 0 AT1G77810 599 / 0.0 Galactosyltransferase family protein (.1.2) Lus10033248 [exp] 517 / 0 AT1G32930 618 / 0.0 Galactosyltransferase family protein (.1) Lus10008282 [exp] 515 / 0 AT1G32930 617 / 0.0 Galactosyltransferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G153700 [exp] 665 / 0 AT1G05170 699 / 0.0 Galactosyltransferase family protein (.1.2) Potri.002G228900 [exp] 644 / 0 AT1G05170 673 / 0.0 Galactosyltransferase family protein (.1.2) Potri.004G013900 [exp] 548 / 0 AT1G05170 547 / 0.0 Galactosyltransferase family protein (.1.2) Potri.011G004200 [exp] 534 / 0 AT1G05170 520 / 0.0 Galactosyltransferase family protein (.1.2) Potri.001G450200 [exp] 528 / 0 AT1G32930 625 / 0.0 Galactosyltransferase family protein (.1) Potri.005G171400 [exp] 517 / 0 AT1G77810 594 / 0.0 Galactosyltransferase family protein (.1.2) Potri.002G089800 [exp] 515 / 0 AT1G77810 611 / 0.0 Galactosyltransferase family protein (.1.2) Potri.011G151400 [exp] 514 / 0 AT1G32930 615 / 0.0 Galactosyltransferase family protein (.1) Potri.019G067300 [exp] 493 / 7e-174 AT1G33430 560 / 0.0 Galactosyltransferase family protein (.1.2) Potri.003G136000 [exp] 259 / 1e-83 AT5G53340 484 / 3e-173 Galactosyltransferase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF01762 [flax] [poplar] Galactosyl_T Galactosyltransferase
Representative CDS sequence Show only first row Show all	>Lus10040062 pacid=23173397 polypeptide=Lus10040062 locus=Lus10040062.g ID=Lus10040062.BGIv1.0 annot-version=v1.0 ATGAGTTGGAAGAGCAGAGGAGGACTTGATCAAAGTTCAAAGGGTGTGGTGTCAAAGAAATGGACTTTCTTGCTTTGTATTGGCTGTTTCTGCGTTGGGA TGCTCTTCTCAGACAGAAGAATGTGGTCTGTGCCAGAAGTCGAAGATGTATCGAGCACAATGAAATTTGAAGATGAGAAACTAAAGTTTATTCCAGAAGG ATGTGCCCCACAAAATAAAGATGTGAATCATGAGTCTAAAGACATAATGGGGGAAGTTTCAAAGACACACGACGCCATACAGACTCTGGATAAGACAATC TCTAGTCTGGAGATGGAATTAGCTGCTGCAAGAGCTACACAGGAATCTATACTTCATGGGTCTCCTGTATCAGACAACTCAAAAATCTCGGAATCAACTG GAAAAAGAAAGTATTTGATGGTTGTAGGTATAAATACTGCTTTTAATAGCAGAAGGCGGAGAGATTCAGTTCGTGCAACATGGATGCCTCAAGGTGATAA GAGAAAGAACCTAGAGGAAGAGAAAGGCATTGTGATGCGGTTTGTTATAGGTCACAGTGCTACAGCAGGAGGTATTCTTGATAGAGCTGTTGAAGCAGAA GACAGGAAGCATGGTGACTTCTTGAGACTAGAACATGTTGAAGGTTATCTTGAATTATCTGCAAAGACAAAAACATACTTCGCCACTGCTGTGAGTTTGT GGGATGCAGAATTTTACGTTAAAGTCGACGATGATATCCATGTTAATATAGCTACACTTGGAGCAACTTTAAGCAGTCACCGAACAAAGCCGAGAGTCTA CATAGGCTGTATGAAATCTGGGCCGGTCCTTGCTCAAAAAGGAGTGAAATACCATGAACCAGAGCATTGGAAATTTGGTGAGGAAGGAAACAAGTACTTC CGTCATGCTACTGGACAATTGTATGCCATCTCATATGACTTGGCTACTTATATATCAATCAACCAACATGTACTGCACAAGTATGTGAATGAAGATGTGT CCCTTGGTGCATGGTTACTTGGGCTGGATGTGGAGCATATTGATGACAGGAGACTCTGCTGTGGTACCCCACCTGATTGCGAGTGGAAGGCCCAGGCAGG TAATGTGTGTGTTGCCTCGTTTGATTGGAGTTGCAGTGGAATCTGCAAATCTGTTGAGAGGATGAAGGAGGTCCATCGTCGATGCGGTGAAGGTGAGAAT GCATTGTGGAGTGCTGCAGAAAGCTGA
AA sequence Show only first row Show all	>Lus10040062 pacid=23173397 polypeptide=Lus10040062 locus=Lus10040062.g ID=Lus10040062.BGIv1.0 annot-version=v1.0 MSWKSRGGLDQSSKGVVSKKWTFLLCIGCFCVGMLFSDRRMWSVPEVEDVSSTMKFEDEKLKFIPEGCAPQNKDVNHESKDIMGEVSKTHDAIQTLDKTI SSLEMELAAARATQESILHGSPVSDNSKISESTGKRKYLMVVGINTAFNSRRRRDSVRATWMPQGDKRKNLEEEKGIVMRFVIGHSATAGGILDRAVEAE DRKHGDFLRLEHVEGYLELSAKTKTYFATAVSLWDAEFYVKVDDDIHVNIATLGATLSSHRTKPRVYIGCMKSGPVLAQKGVKYHEPEHWKFGEEGNKYF RHATGQLYAISYDLATYISINQHVLHKYVNEDVSLGAWLLGLDVEHIDDRRLCCGTPPDCEWKAQAGNVCVASFDWSCSGICKSVERMKEVHRRCGEGEN ALWSAAES

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G05170			Galactosyltransferase family p...		Lus10040062 [exp]	0	1
AT5G32470			Haem oxygenase-like, multi-hel...		Lus10042514 [exp]	1.4	0.7951
AT3G55020			Ypt/Rab-GAP domain of gyp1p su...		Lus10023472 [exp]	1.7	0.7880
AT1G76160		SKS5	SKU5 similar 5 (.1)		Lus10005649 [exp]	2.0	0.8241
AT5G55990		ATCBL2, CBL2	calcineurin B-like protein 2 (...		Lus10038764 [exp]	3.0	0.7595
AT3G54120			Reticulon family protein (.1)		Lus10027756 [exp]	10.0	0.7164
AT2G47470		ATPDI11, ATPDIL...	UNFERTILIZED EMBRYO SAC 5, MAT...		Lus10029854 [exp]	13.0	0.6060
AT2G43240			Nucleotide-sugar transporter f...		Lus10025486 [exp]	13.0	0.7727
AT3G54120			Reticulon family protein (.1)		Lus10035537 [exp]	13.3	0.7475
AT5G52560		ATUSP	UDP-sugar pyrophosphorylase (....		Lus10000971 [exp]	16.9	0.7286
AT5G42860			unknown protein		Lus10010231 [exp]	19.3	0.7380

Compare expression of checked genes

Lus10040062 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.