Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G55050 259 / 1e-85 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT5G08460 163 / 7e-48 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G71691 153 / 4e-45 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) AT1G29670 153 / 2e-44 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G29660 150 / 2e-43 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT3G50400 150 / 3e-43 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT5G15720 150 / 4e-43 GLIP7 GDSL-motif lipase 7 (.1) AT5G45670 149 / 9e-43 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT4G10950 148 / 3e-42 SGNH hydrolase-type esterase superfamily protein (.1) AT1G74460 147 / 4e-42 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021540 [exp] 492 / 4e-177 AT5G55050 357 / 5e-122 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10021543 [exp] 271 / 8e-92 AT5G55050 180 / 6e-55 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10025105 [exp] 192 / 3e-59 AT5G55050 233 / 2e-73 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10023979 [exp] 191 / 1e-58 AT5G55050 229 / 5e-72 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10034459 [exp] 169 / 2e-50 AT1G74460 546 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10019095 [exp] 167 / 9e-50 AT1G74460 550 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10025104 [exp] 163 / 5e-48 AT5G55050 211 / 3e-65 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10023980 [exp] 162 / 1e-47 AT5G55050 215 / 1e-66 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10021664 [exp] 158 / 4e-46 AT1G74460 526 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G089700 [exp] 326 / 8e-112 AT5G55050 375 / 3e-129 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.005G104900 [exp] 168 / 1e-49 AT5G55050 209 / 7e-64 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.008G104600 [exp] 160 / 5e-47 AT2G23540 370 / 3e-127 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.012G068700 [exp] 159 / 2e-46 AT1G74460 549 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.004G064500 [exp] 154 / 1e-44 AT1G29670 527 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.004G180400 [exp] 154 / 2e-44 AT4G28780 200 / 4e-61 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.011G076500 [exp] 153 / 3e-44 AT5G45670 533 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.004G086700 [exp] 149 / 5e-43 AT5G37690 527 / 0.0 SGNH hydrolase-type esterase superfamily protein (.1) Potri.013G102500 [exp] 150 / 6e-43 AT1G71691 481 / 2e-170 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Potri.019G076600 [exp] 149 / 1e-42 AT1G71691 477 / 5e-169 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0264 [flax] [poplar] SGNH_hydrolase PF00657 [flax] [poplar] Lipase_GDSL GDSL-like Lipase/Acylhydrolase
Representative CDS sequence Show only first row Show all	>Lus10040064 pacid=23173527 polypeptide=Lus10040064 locus=Lus10040064.g ID=Lus10040064.BGIv1.0 annot-version=v1.0 ATGAGCGGCGTGAGCTTTGCATCCGGTGGCGCCGGCATCTTCAACGGAAGCGACCAACTTCTGCGTCAGTCAATTCCATTGGCCAGACAAGTGGAGGACT ACCAATCAGTTTACCAGATATTGATTAAGCAGATGGGGAAGCCAGCAGCAGAAGCTCACGTTGCCAAATCAATATTCGCTATTGTGATTGGAAGTAATGA CATTTTTGGGTATTCAAACTCCTCATCTTCACGGAAACAGAGCACACCACCTCAGATGTTTGTGAATTTGATGGCTACCACTCTCAAAGCTCACCTCAAG ACACTGTACGCAAATGGGGCGCGTAAGTTTGCAGTGGCTGGGGTTGGAGCACTTGGTTGCTCCCCAAGAGAAAGGCTCAAAGACGCCAAAACCCAAGACT GCAACCAAGACCAAAACTCCATGGCCATATTGTACAACCAGCAGCTGAACTCAATATTGCAAAGTCTCAAGTCCGAGTTTGGAAATGCCTTCTCCTACTC CTATTTTGACACCTTCTCAATGCTCCACAACATCATACTAAACCCATCCCAATTCGGATTTGTGGAAGTGAAATCAGCATGTTGTGGGCTAGGGGAATTG AGAGCCAAGGTACCATGTCTCCCCATAGCAAACTACTGCTCCAACAGAAGAGACCATGTGTTTTGGGATCTGTTCCACCCTACAGAAGCATCATATCAGA TTCTCATTGATGCTTTCTTTGATGGAACTTCACACTACACTTACCCCATTAATCTCAGGCAGCTGGCGTCCTTGAACATTGGGAATTAG
AA sequence Show only first row Show all	>Lus10040064 pacid=23173527 polypeptide=Lus10040064 locus=Lus10040064.g ID=Lus10040064.BGIv1.0 annot-version=v1.0 MSGVSFASGGAGIFNGSDQLLRQSIPLARQVEDYQSVYQILIKQMGKPAAEAHVAKSIFAIVIGSNDIFGYSNSSSSRKQSTPPQMFVNLMATTLKAHLK TLYANGARKFAVAGVGALGCSPRERLKDAKTQDCNQDQNSMAILYNQQLNSILQSLKSEFGNAFSYSYFDTFSMLHNIILNPSQFGFVEVKSACCGLGEL RAKVPCLPIANYCSNRRDHVFWDLFHPTEASYQILIDAFFDGTSHYTYPINLRQLASLNIGN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G55050			GDSL-like Lipase/Acylhydrolase...		Lus10040064 [exp]	0	1
AT4G40070			RING/U-box superfamily protein...		Lus10043426 [exp]	2.2	0.9309
AT5G55050			GDSL-like Lipase/Acylhydrolase...		Lus10040065 [exp]	3.0	0.9067
AT5G67090			Subtilisin-like serine endopep...		Lus10009748 [exp]	3.5	0.9185
AT5G16000		NIK1	NSP-interacting kinase 1 (.1)		Lus10019145 [exp]	3.9	0.9171
AT2G35940	HD	BLH1, EDA29	embryo sac development arrest ...		Lus10004201 [exp]	5.9	0.9126
AT1G75250	MYB	RSM3, ATRL6	RADIALIS-LIKE SANT/MYB 3, RAD-...		Lus10026009 [exp]	7.1	0.9164
AT5G65840			Thioredoxin superfamily protei...		Lus10011727 [exp]	9.2	0.9167
AT4G36930	bHLH	SPT, bHLH024	SPATULA, basic helix-loop-heli...		Lus10038020 [exp]	10.0	0.9063
AT4G26530			Aldolase superfamily protein (...		Lus10005849 [exp]	13.0	0.8961
AT1G71890		SUC5, ATSUC5	SUCROSE-PROTON SYMPORTER 5, Ma...		Lus10028616 [exp]	13.9	0.8899

Compare expression of checked genes

Lus10040064 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.