Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G21970 89 / 4e-22 Protein of unknown function, DUF584 (.1) AT4G04630 85 / 3e-20 Protein of unknown function, DUF584 (.1) AT3G15040 70 / 4e-14 Protein of unknown function, DUF584 (.1) AT3G45210 67 / 1e-13 Protein of unknown function, DUF584 (.1) AT2G34340 64 / 1e-12 Protein of unknown function, DUF584 (.1) AT1G29640 63 / 2e-12 Protein of unknown function, DUF584 (.1) AT4G26950 62 / 5e-12 Protein of unknown function, DUF584 (.1.2) AT5G60680 61 / 3e-11 Protein of unknown function, DUF584 (.1) AT2G28400 59 / 1e-10 Protein of unknown function, DUF584 (.1) AT4G21930 54 / 9e-09 Protein of unknown function, DUF584 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021536 [exp] 296 / 7e-103 AT4G21970 102 / 1e-27 Protein of unknown function, DUF584 (.1) Lus10006781 [exp] 92 / 4e-23 AT4G21970 128 / 6e-38 Protein of unknown function, DUF584 (.1) Lus10020043 [exp] 92 / 5e-23 AT4G21970 127 / 1e-37 Protein of unknown function, DUF584 (.1) Lus10000724 [exp] 66 / 4e-13 AT3G45210 111 / 1e-31 Protein of unknown function, DUF584 (.1) Lus10021474 [exp] 66 / 4e-13 AT5G60680 138 / 6e-42 Protein of unknown function, DUF584 (.1) Lus10020047 [exp] 62 / 1e-11 AT1G61930 124 / 8e-36 Protein of unknown function, DUF584 (.1) Lus10029411 [exp] 62 / 2e-11 AT3G15040 112 / 3e-30 Protein of unknown function, DUF584 (.1) Lus10034190 [exp] 61 / 3e-11 AT3G15040 125 / 9e-36 Protein of unknown function, DUF584 (.1) Lus10011993 [exp] 59 / 3e-11 AT1G29640 105 / 4e-30 Protein of unknown function, DUF584 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G014000 [exp] 105 / 7e-28 AT4G04630 124 / 4e-36 Protein of unknown function, DUF584 (.1) Potri.011G004100 [exp] 100 / 4e-26 AT4G04630 125 / 1e-36 Protein of unknown function, DUF584 (.1) Potri.009G014100 [exp] 75 / 2e-16 AT3G45210 124 / 2e-36 Protein of unknown function, DUF584 (.1) Potri.004G211100 [exp] 74 / 4e-16 AT5G60680 120 / 1e-34 Protein of unknown function, DUF584 (.1) Potri.016G076300 [exp] 66 / 9e-13 AT3G15040 90 / 9e-22 Protein of unknown function, DUF584 (.1) Potri.016G089900 [exp] 62 / 9e-12 AT5G03230 115 / 6e-33 Protein of unknown function, DUF584 (.1) Potri.004G015700 [exp] 62 / 2e-11 AT1G11700 151 / 5e-46 Protein of unknown function, DUF584 (.1) Potri.006G127900 [exp] 61 / 2e-11 AT5G03230 122 / 1e-35 Protein of unknown function, DUF584 (.1) Potri.011G076900 [exp] 59 / 5e-11 AT1G29640 90 / 4e-24 Protein of unknown function, DUF584 (.1) Potri.011G003300 [exp] 57 / 8e-10 AT1G11700 161 / 6e-50 Protein of unknown function, DUF584 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04520 [flax] [poplar] Senescence_reg Senescence regulator
Representative CDS sequence Show only first row Show all	>Lus10040067 pacid=23173537 polypeptide=Lus10040067 locus=Lus10040067.g ID=Lus10040067.BGIv1.0 annot-version=v1.0 ATGTTGAAATTGGGAAAGCACTGGGGTTATGGTGCTGTTGTTGTTCCAGTTAGGTTGATTAAGCAAGCAATTAGGTTGATGATGATGAGGCAGGGGACCG GGGTGTGGAGATGTTTGAGAGACGGTGATTATCAGGAGCAAGATGTTTGGGATGTGCTGTCGGACATGAAACCTCCCAATTCCATGATGCTTGAAAATTT GAGTGAAAAAATCTCTACTCCACCTTGTCTGGTTGTTGGCAGAAACCCTCCCTCAGGCTCAGCCGCCAGAATGATCCAAATTAGCAGTGAAAGCAGCTGT AACGACAATGAAACCAAGTTGATGGTGCAGCACTCAGCCCCAGTCAACATCCATGACTGGTCCAAGATGATGAGCGGCAAAAAGCAGCAGCAGCAGCCGC CCAGGAAAACCTACAAACATTCCAATTTATGGATTGGCTTCGAATTCGATGATGATGAAGAAGATGAATATGAGGGTGATGATATTGATGATGAGTACGG TAGTAGCTATAATAAGGAGCCGCCACATGAGATGATAGCGAGGAGAATGGCGAGTAGCCAGATTTCGTCATTTTCTGTGTTTGAAGGACTTGGAAGGACT CTCAAAGGAAGGGACCTTAGTAAAGTCAGGAATGCTGTCCTCAGCAGAACTGGATTCCTTGAATCTTGTGAGAAAAATGGCAAAAGTGTCGATTCCATTA TTGATGAATGA
AA sequence Show only first row Show all	>Lus10040067 pacid=23173537 polypeptide=Lus10040067 locus=Lus10040067.g ID=Lus10040067.BGIv1.0 annot-version=v1.0 MLKLGKHWGYGAVVVPVRLIKQAIRLMMMRQGTGVWRCLRDGDYQEQDVWDVLSDMKPPNSMMLENLSEKISTPPCLVVGRNPPSGSAARMIQISSESSC NDNETKLMVQHSAPVNIHDWSKMMSGKKQQQQPPRKTYKHSNLWIGFEFDDDEEDEYEGDDIDDEYGSSYNKEPPHEMIARRMASSQISSFSVFEGLGRT LKGRDLSKVRNAVLSRTGFLESCEKNGKSVDSIIDE

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G21970			Protein of unknown function, D...		Lus10040067 [exp]	0	1
AT3G10300			Calcium-binding EF-hand family...		Lus10035435 [exp]	3.3	0.8466
AT3G01470	HD	HD-ZIP-1, HAT5,...	HOMEODOMAIN PROTEIN FROM ARABI...		Lus10008795 [exp]	3.5	0.8438
					Lus10001746 [exp]	7.3	0.7490
AT3G17980		AtC2	Arabidopsis thaliana C2 domain...		Lus10009053 [exp]	14.2	0.7700
AT4G36830		HOS3-1	GNS1/SUR4 membrane protein fam...		Lus10016797 [exp]	14.5	0.7691
AT4G37470			alpha/beta-Hydrolases superfam...		Lus10037651 [exp]	14.5	0.7769
AT2G35940	HD	BLH1, EDA29	embryo sac development arrest ...		Lus10021270 [exp]	16.5	0.8167
AT5G04220		SYT3, NTMCTYPE1...	synaptotagmin 3, Calcium-depen...		Lus10023529 [exp]	17.7	0.7736
AT3G13600			calmodulin-binding family prot...		Lus10016052 [exp]	19.0	0.7583
					Lus10016958 [exp]	20.0	0.8201

Compare expression of checked genes

Lus10040067 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.