Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G04640 460 / 1e-162 ATPC1 ATPase, F1 complex, gamma subunit protein (.1) AT1G15700 439 / 3e-154 ATPC2 ATPase, F1 complex, gamma subunit protein (.1) AT2G33040 100 / 6e-24 ATP3 gamma subunit of Mt ATP synthase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021535 [exp] 665 / 0 AT4G04640 496 / 6e-177 ATPase, F1 complex, gamma subunit protein (.1) Lus10002078 [exp] 454 / 2e-160 AT4G04640 595 / 0.0 ATPase, F1 complex, gamma subunit protein (.1) Lus10012200 [exp] 94 / 1e-20 AT5G13650 1019 / 0.0 SUPPRESSOR OF VARIEGATION 3, elongation factor family protein (.1.2) Lus10042366 [exp] 90 / 5e-20 AT2G33040 508 / 0.0 gamma subunit of Mt ATP synthase (.1) Lus10007534 [exp] 68 / 1e-12 AT2G33040 445 / 3e-159 gamma subunit of Mt ATP synthase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G014850 [exp] 477 / 3e-169 AT4G04640 557 / 0.0 ATPase, F1 complex, gamma subunit protein (.1) Potri.011G024700 [exp] 455 / 1e-160 AT4G04640 518 / 0.0 ATPase, F1 complex, gamma subunit protein (.1) Potri.011G003800 [exp] 126 / 6e-34 AT4G04640 140 / 2e-39 ATPase, F1 complex, gamma subunit protein (.1) Potri.012G066100 [exp] 91 / 2e-20 AT2G33040 515 / 0.0 gamma subunit of Mt ATP synthase (.1) Potri.015G057700 [exp] 87 / 3e-19 AT2G33040 513 / 0.0 gamma subunit of Mt ATP synthase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00231 [flax] [poplar] ATP-synt ATP synthase
Representative CDS sequence Show only first row Show all	>Lus10040068 pacid=23173495 polypeptide=Lus10040068 locus=Lus10040068.g ID=Lus10040068.BGIv1.0 annot-version=v1.0 ATGTCCTCTACCAATCTGGCTATGTGGGTCGTTCCTAAAGCTTGCGAAGTACACACCTTTGGCTTCTCTTCTGGGTTTCCCCTTTCAAATCGCAAAAATG CTTCGTCTCGGTCTGCACCAATTCGCTGTGGACTCCGTGAGTTGAGAGACCGAATCAAAACAGTCAAAAACACCCAAAAAATTGCTGAGGCAATGAAGTT GGTGTCGGCTGCTAAGGTCCGACGAGCTCAAGAAGCTGTGATCAACGGGAGACCCTTTGCGGAAACATTATTTGATGTGCTCTATGATATCAACGAACGC CTTCAGTTGGAGGACATTGATGTTCCTTTAACACAAGTTAGGGCTGTGAAGAGAGTTTCCCTTGTGGTTGTTTCTGGTGATAGAGGTCTCTGTGGTGGTT TCAACAACGCTGTATTGAGAAAGGCAGAAACTCGGATGGAGGAATTAGAAAAGCTTGGTTTTGATTACCGTGTTATCAGTGTAGGGAAGAAAGGTAATTC CTACTATATGCGAAGGCCTAATGTTTCTGTTGACAGATACATTGAAGGGAACACTTTCCCAACTGCCAAGGAAGCTCAAATGATTGCCGACGATGTTTTC TCAATGTTTGTCAGTGAAGAGGTTGATAAGATTGAGCTTGTGTACACTAAGTTTGTGTCGTTGATCAAGTCGGAACCTATTATTCGTACGCTGTTGCCAT TGTCGCCCAGAGGAGGACTTCGTGATGTCAATGGGAACCCTGTTGATGCAGCTGAAGATGAGTTCTTTAGGTTGACAAGTAAGCAAGGGAGATTGTCCGT GGAGAGGGAGAGTGGTGGGAGTGGTAAAAGTGAAGGGCTTTCCCCACTTATGGAGTTTGAGCAGGACCCTGTCCAGATCATTGATGCTATGATGCCTCTT TACTTGAACAGCCAGATTTTGAGAGCGCTTCAGGAATCGTACGCTAGTGAACTTGCGTCGAGGATGAACGCGATGAGTAATGCAACCGACAATGCAGTTG AGTTGAACAAGAATCTATCTGTTGCATATAACAGAGCACGCCAGGCTAAAATCACGGGAGAGTTGTTGGAGATCATTGCTGGAGCTGACGCATTAACAGA TTTGTAA
AA sequence Show only first row Show all	>Lus10040068 pacid=23173495 polypeptide=Lus10040068 locus=Lus10040068.g ID=Lus10040068.BGIv1.0 annot-version=v1.0 MSSTNLAMWVVPKACEVHTFGFSSGFPLSNRKNASSRSAPIRCGLRELRDRIKTVKNTQKIAEAMKLVSAAKVRRAQEAVINGRPFAETLFDVLYDINER LQLEDIDVPLTQVRAVKRVSLVVVSGDRGLCGGFNNAVLRKAETRMEELEKLGFDYRVISVGKKGNSYYMRRPNVSVDRYIEGNTFPTAKEAQMIADDVF SMFVSEEVDKIELVYTKFVSLIKSEPIIRTLLPLSPRGGLRDVNGNPVDAAEDEFFRLTSKQGRLSVERESGGSGKSEGLSPLMEFEQDPVQIIDAMMPL YLNSQILRALQESYASELASRMNAMSNATDNAVELNKNLSVAYNRARQAKITGELLEIIAGADALTDL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G04640		ATPC1	ATPase, F1 complex, gamma subu...		Lus10040068 [exp]	0	1
AT5G28750			Bacterial sec-independent tran...		Lus10006588 [exp]	3.5	0.8689
AT5G27460			Tetratricopeptide repeat (TPR)...		Lus10020948 [exp]	7.3	0.8435
AT4G33030		SQD1	sulfoquinovosyldiacylglycerol ...		Lus10024985 [exp]	8.4	0.8848
					Lus10018968 [exp]	13.0	0.8207
AT3G46610			Pentatricopeptide repeat (PPR-...		Lus10014577 [exp]	14.3	0.8845
AT1G75130		CYP721A1	"cytochrome P450, family 721, ...		Lus10010802 [exp]	15.5	0.8311
AT1G12700		RPF1	RNA processing factor 1, ATP b...		Lus10036865 [exp]	24.6	0.7949
AT1G69200		FLN2	fructokinase-like 2 (.1)		Lus10036920 [exp]	25.2	0.7970
AT1G74120			Mitochondrial transcription te...		Lus10007988 [exp]	26.0	0.7843
AT1G79080			Pentatricopeptide repeat (PPR)...		Lus10031792 [exp]	29.6	0.8559

Compare expression of checked genes

Lus10040068 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.