Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G42990 78 / 3e-16 bZIP AtBZIP60 Bbasic region/leucine zipper motif 60, basic region/leucine zipper motif 60 (.1) AT4G35900 47 / 1e-05 bZIP ATBZIP14, FD-1, FD Basic-leucine zipper (bZIP) transcription factor family protein (.1) AT5G11260 45 / 2e-05 bZIP TED5, HY5 REVERSAL OF THE DET PHENOTYPE 5, ELONGATED HYPOCOTYL 5, Basic-leucine zipper (bZIP) transcription factor family protein (.1) AT2G40950 44 / 0.0001 bZIP BZIP17 Basic-leucine zipper (bZIP) transcription factor family protein (.1) AT3G56660 44 / 0.0001 bZIP BZIP49 basic region/leucine zipper motif protein 49 (.1) AT3G17609 41 / 0.0001 bZIP HYH HY5-homolog (.1.2.3.4) AT2G41070 43 / 0.0002 bZIP DPBF4, ATBZIP12, EEL ENHANCED EM LEVEL, Basic-leucine zipper (bZIP) transcription factor family protein (.1), Basic-leucine zipper (bZIP) transcription factor family protein (.2), Basic-leucine zipper (bZIP) transcription factor family protein (.3) AT3G56850 42 / 0.0004 bZIP DPBF3, AREB3 ABA-responsive element binding protein 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021534 [exp] 243 / 1e-80 AT1G42990 76 / 4e-17 Bbasic region/leucine zipper motif 60, basic region/leucine zipper motif 60 (.1) Lus10002900 [exp] 46 / 7e-06 AT5G11260 197 / 3e-65 REVERSAL OF THE DET PHENOTYPE 5, ELONGATED HYPOCOTYL 5, Basic-leucine zipper (bZIP) transcription factor family protein (.1) Lus10002028 [exp] 45 / 3e-05 AT5G11260 182 / 5e-59 REVERSAL OF THE DET PHENOTYPE 5, ELONGATED HYPOCOTYL 5, Basic-leucine zipper (bZIP) transcription factor family protein (.1) Lus10010440 [exp] 45 / 7e-05 AT2G40950 466 / 5e-155 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Lus10012104 [exp] 44 / 0.0001 AT2G40950 454 / 9e-150 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Lus10008927 [exp] 41 / 0.0002 AT3G56850 139 / 1e-41 ABA-responsive element binding protein 3 (.1) Lus10028889 [exp] 42 / 0.0004 AT3G56850 273 / 7e-91 ABA-responsive element binding protein 3 (.1) Lus10009755 [exp] 42 / 0.0008 AT1G45249 283 / 3e-91 ABSCISIC ACID RESPONSIVE ELEMENTS-BINDING PROTEIN 2, abscisic acid responsive elements-binding factor 2 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G257900 [exp] 135 / 5e-37 AT1G42990 101 / 1e-24 Bbasic region/leucine zipper motif 60, basic region/leucine zipper motif 60 (.1) Potri.006G251800 [exp] 48 / 1e-06 AT5G11260 143 / 6e-44 REVERSAL OF THE DET PHENOTYPE 5, ELONGATED HYPOCOTYL 5, Basic-leucine zipper (bZIP) transcription factor family protein (.1) Potri.018G029500 [exp] 45 / 1e-05 AT5G11260 185 / 2e-60 REVERSAL OF THE DET PHENOTYPE 5, ELONGATED HYPOCOTYL 5, Basic-leucine zipper (bZIP) transcription factor family protein (.1) Potri.002G090700 [exp] 44 / 0.0001 AT1G77920 444 / 1e-156 bZIP transcription factor family protein (.1) Potri.010G004200 [exp] 42 / 0.0002 AT3G17609 132 / 1e-39 HY5-homolog (.1.2.3.4) Potri.016G032400 [exp] 43 / 0.0003 AT2G40950 498 / 9e-167 Basic-leucine zipper (bZIP) transcription factor family protein (.1) Potri.010G248300 [exp] 42 / 0.0005 AT3G56850 216 / 9e-69 ABA-responsive element binding protein 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0018 [flax] [poplar] bZIP PF00170 [flax] [poplar] bZIP_1 bZIP transcription factor
Representative CDS sequence Show only first row Show all	>Lus10040069 pacid=23173415 polypeptide=Lus10040069 locus=Lus10040069.g ID=Lus10040069.BGIv1.0 annot-version=v1.0 ATGGGGCAAATAGATTGGGACAGTTTTGAGGGATTGCTAGAGAATGGAAGTGAAGTTGACATCTTCCATCAAGGGCCCGATGCGGCTCTATCGTCCTTTC CCAATTCGGTTCCAGATTCCTTATCTTGTCAGATCGAGGATATCGAGAATCTCTTGATGACAGAGGATGGACCTGGCGATCTTCATTTAGACGATGATTT CCTTGCCCAATTCCTCGTGGATTCCCCTCCTACTCCTCCCGCAGATGATTCTTCTAGCCCTGATCCTGATATTTCTCATTCTTCTTTGTCTTCTCGTCCT GATTCCTCCGACAAGGATAATGCTAGGTGTCTTGCAGCTGGATCACCCCACCCTCATTTGGCTGTTGAAGATGATGATGACGACGATGATGATACAGCTC CTAATGACCCCATCTCTAAGAAGCGGCGGAGGCAGTTGAGAAACAGGGATGCGGCAGTGAGATCTAGGGAGAGGAAGAAGATGTATGTGAAGGATCTAGA GATGAAGAGCAAGTATTTGGAATGGGAATGCAGGAGACTGGGGCGGTTGCTTCAGTGCTGCGCTGCTGAGAATCAAGCTCTGCGGTTTAGTTTACAGAGT AGAAGTGGTGTTGCGGCATATGGTGCTACCTCGGCCAGGCAGGAGTCTGCTGTGCTCTTGTTGGGCTTAAACATACTTGTCTGCATTGGGTTTGAACTAA CTGGCATTGGCATTGGCATTGGCACTAGCACTGACATTGTTGGCGTTCTTTGTGTGTTTGCAGAATCCCTGCTGTTGGGTTCCCTGCTTTGGTTCCTGGG CATCATGTGCCTGTTCAGTCTACCGACTGTGGCCCAGTTAATGGTTCCTCTAATGGAACCAAAAGGGGAGAGTCGAAAAGAAGGAAAAAGAAGTAAAATG GCCACGCCGCATCTGGGCGAGCCATTTCTGGTAAGGGGCAGGAGATGCAAGGCTTCACGGACTAGGATGAAACTGACATATTTATATTCATCATGCATAG GTGTTATGGTGGAAGAGAGTAGGGCTATGTACTGTTTAGTGAAGTAA
AA sequence Show only first row Show all	>Lus10040069 pacid=23173415 polypeptide=Lus10040069 locus=Lus10040069.g ID=Lus10040069.BGIv1.0 annot-version=v1.0 MGQIDWDSFEGLLENGSEVDIFHQGPDAALSSFPNSVPDSLSCQIEDIENLLMTEDGPGDLHLDDDFLAQFLVDSPPTPPADDSSSPDPDISHSSLSSRP DSSDKDNARCLAAGSPHPHLAVEDDDDDDDDTAPNDPISKKRRRQLRNRDAAVRSRERKKMYVKDLEMKSKYLEWECRRLGRLLQCCAAENQALRFSLQS RSGVAAYGATSARQESAVLLLGLNILVCIGFELTGIGIGIGTSTDIVGVLCVFAESLLLGSLLWFLGIMCLFSLPTVAQLMVPLMEPKGESRKEGKRSKM ATPHLGEPFLVRGRRCKASRTRMKLTYLYSSCIGVMVEESRAMYCLVK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G42990	bZIP	AtBZIP60	Bbasic region/leucine zipper m...		Lus10040069 [exp]	0	1
AT4G33920			Protein phosphatase 2C family ...		Lus10013896 [exp]	1.4	0.9700
AT4G33920			Protein phosphatase 2C family ...		Lus10002110 [exp]	2.4	0.9519
AT5G60750			CAAX amino terminal protease f...		Lus10024708 [exp]	2.4	0.9371
AT4G34150			Calcium-dependent lipid-bindin...		Lus10027875 [exp]	2.4	0.9527
AT3G53810			Concanavalin A-like lectin pro...		Lus10016506 [exp]	3.2	0.9270
AT3G51120			DNA binding;zinc ion binding;n...		Lus10025974 [exp]	4.6	0.9315
AT5G48290			Heavy metal transport/detoxifi...		Lus10025181 [exp]	4.9	0.9434
AT5G58380		PKS2, CIPK10, S...	SNF1-RELATED PROTEIN KINASE 3....		Lus10022749 [exp]	5.1	0.9211
AT4G11070	WRKY	ATWRKY41, WRKY4...	WRKY family transcription fact...		Lus10001902 [exp]	5.2	0.9286
AT5G58380		PKS2, CIPK10, S...	SNF1-RELATED PROTEIN KINASE 3....		Lus10014163 [exp]	6.3	0.9291

Compare expression of checked genes

Lus10040069 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.