Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G05710 1524 / 0 ACO3 aconitase 3 (.1) AT4G26970 1477 / 0 ACO2 aconitase 2 (.1) AT4G35830 1470 / 0 ACO1 aconitase 1 (.1.2) AT5G54950 92 / 3e-22 Aconitase family protein (.1) AT4G13430 73 / 5e-13 ATLEUC1, IIL1 isopropyl malate isomerase large subunit 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021533 [exp] 1726 / 0 AT2G05710 1523 / 0.0 aconitase 3 (.1) Lus10015116 [exp] 1524 / 0 AT2G05710 1707 / 0.0 aconitase 3 (.1) Lus10027165 [exp] 1505 / 0 AT2G05710 1706 / 0.0 aconitase 3 (.1) Lus10039678 [exp] 1500 / 0 AT2G05710 1704 / 0.0 aconitase 3 (.1) Lus10031561 [exp] 1477 / 0 AT2G05710 1674 / 0.0 aconitase 3 (.1) Lus10028405 [exp] 1457 / 0 AT4G35830 1695 / 0.0 aconitase 1 (.1.2) Lus10041858 [exp] 1454 / 0 AT4G35830 1695 / 0.0 aconitase 1 (.1.2) Lus10032620 [exp] 72 / 1e-12 AT4G13430 772 / 0.0 isopropyl malate isomerase large subunit 1 (.1) Lus10043129 [exp] 72 / 2e-12 AT4G13430 852 / 0.0 isopropyl malate isomerase large subunit 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G153400 [exp] 1576 / 0 AT2G05710 1695 / 0.0 aconitase 3 (.1) Potri.002G229200 [exp] 1550 / 0 AT2G05710 1674 / 0.0 aconitase 3 (.1) Potri.007G060900 [exp] 1481 / 0 AT4G35830 1658 / 0.0 aconitase 1 (.1.2) Potri.005G108100 [exp] 1476 / 0 AT4G35830 1668 / 0.0 aconitase 1 (.1.2) Potri.015G130201 [exp] 130 / 3e-35 AT4G35830 145 / 2e-41 aconitase 1 (.1.2) Potri.010G065100 [exp] 69 / 1e-11 AT4G13430 850 / 0.0 isopropyl malate isomerase large subunit 1 (.1) Potri.008G172500 [exp] 67 / 3e-11 AT4G13430 644 / 0.0 isopropyl malate isomerase large subunit 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0364 [flax] [poplar] Leu-IlvD PF00694 [flax] [poplar] Aconitase_C Aconitase C-terminal domain CL0364 [flax] [poplar] PF00330 [flax] [poplar] Aconitase Aconitase family (aconitate hydratase)
Representative CDS sequence Show only first row Show all	>Lus10040070 pacid=23173472 polypeptide=Lus10040070 locus=Lus10040070.g ID=Lus10040070.BGIv1.0 annot-version=v1.0 ATGCCAATCCATATGTCTACGTCGGCTCCTTGTTCTCCTTCTTCTCTTCTTCGTTCTCGCCTATCTTCCTGCCGGTTCCCTGTCTCTTTATTCACTTCCC GTTATGGCGTTTCTTCTTCCAAATTCATCACTCCTTCTTCTGTTGCTTTCGGTAACCGTCAGAATGTTCGGTATCTGAGCTTTTCGTCGTCGTTGCAGTC ATTCCGATACTCAGCTCATCGTTGGAACCATGGGGTCGATTGGCGATTGCCTTTGAGCCTCCGTGCTCAGACACGAGCTACTTCCCCTTTTGTTGAGCGG ATTGAGAAGTCGATTTCCACTATGGCTTCTGAAAATCCTTATAAGGGCATATTGACTTCCCTTCCCAAGCCTGGAGGTGGGGAGTTTGGGAAATTCTTCA GCTTACCTGCTCTGAATGATCCCCGAATCGATAGGCTTCCGTACTCTATACGAATTCTTTTGGAATCAGCTATTCGGAACTGTGATAACTTCCAAGTTAC TAATGATGATGTCGAGAAGATTATTGATTGGGAGAATACATCACCTAATAATGTCGAAATCCCCTTTAAGCCTGCCCGAGTGCTGCTACAGGATTTCACT GGAGTGCCTGCCGTTGTTGACCTTGCTTGTATGCGGGATGCTATGAAGAAACTCAGCAGTGATCCTAAGAAGATCAATCCATTGGTTCCGGTCGACCTTG TTGTTGATCATTCAGTTCAAGTTGATGTAGCAAGAACAGAAAATGCCGTACAAGCAAACATGGAGCATGAGTTTAGGAGAAACAAGGAGAGATTTGCTTT TCTCAAATGGGGAGCATCTGCTTTTCAAAACATGCTTGTTGTCCCTCCTGGTTCTGGAATTGTACACCAGGTTAATTTGGAGTACCTTGGACGTGTAGTC TTTAACACTGATGGACTTCTCTACCCTGATAGCGTGGTTGGTACGGATTCACATACAACTATGATTAATGGGTTAGGCATTGCTGGCTGGGGAGTTGGAG GAATCGAAGCAGAAGCCACAATGCTTGGACAGCCCATGAGTATGGTACTCCCTGGTGTTGTTGGTTTTGAGTTGTCTGGTGAATTGCGCAATGGGGTTAC AGCAACTGACTTAGTACTGACGGTTACTCAAATGCTGAGGAAACATGGTGTTGTCGGGAAGTTTGTGGAGTTCTATGGTGATGGCATGAGTAGACTATCA TTAGTTGATCGGGCTACAATTGCAAATATGTCTCCGGAATATGGAGCAACAATGGGCTTCTTCCCTGTTGATCATGTGACGCTAGAATATCTGAAACTGA CTGGGAGAAGTGATGATACGGTGGAAATGATAGAACAATACCTGCGAGCAAACAAGTTATTTGTTGACTACAGTGAGCCAGAACAAGAGAGGTCATACAC GTCATATATGCAGTTGGACCTTGCAGAAGTTGAACCTTGTGTTTCAGGACCAAAGAGACCTCATGATCGTGTACCGTTGAAAGACATGAAGGATGACTGG AGGGCATGTCTTGGTAACTCAGTTGGCTTCAAAGGATATGGTATACCGAAGGAAGAGCATGACAAAGTGGAAAAGTTCTCCTTTCATGGACAACCTGCTG AACTTGCGCATGGGAGTGTTGTCATTGCAGCTATCACAAGTTGTACAAACACGTCAAACCCTAGCGTCATGCTTGGGGCTGGTCTCGTGGCGAAGAAAGC TAGTGAACTTGGGTTACAGGTTAAGCCATGGATTAAAACTAGTCTTGCTCCAGGGTCTGGAGTTGTGACAAAATATTTGCAGAAGAGTGGATTGCTGCGG TACTTGAATGAGCAAGGTTTTCAGCATGTTGGCTATGGCTGCACAACCTGTATTGGAAATTCCGGAGAGCTGGATGAATCAGTTGCTTCTGCCATTTCAA ACAATGACATCATTGCTGCAGCAGTTCTCTCTGGAAATCGAAATTTTGAAGGGCGGATTCATCCACTGACAAAAGCTAACTATCTTGCCTCTCCTCCATT AGTTGTTGCCTATGCACTAGCAGGCACGGTCAACATTGACTTTGAGAAGGATCCCATTGGAACTGGGAAAGATGGAAAAGAGGTTTTCTTTAGGGATATC TGGCCTAGTAATGAAGAGATTGCAGAGGTTGTGCAATCTAGTGTGCTACCGGATATGTTCAGAAGTACGTATGAAGCTATAACGAATGGGAACCACATGT GGAATGAGCTCAGCATCCCTGCTTCTTTTCTTTACTCATGGGATCCAAAATCTACATACATTCATGAGCCACCATACTTCAAGAATATCAACATGGAACC ACCCGGTCCTCACGGGGTGAAGGATGCTTACTGCTTGCTCAAGTTTGGTGACAGTGTAACTACCGATCACATCTCCCCTGCAGGAAGTATTCATAAAGAT AGCCCAGCTGCAACGTACCTTCGAGAGCGTGGGGTCGATCCCAAGGACTTCAATTCTTATGGCAGCCGTCGTGGAAATGATGAAGTAATGGCGAGGGGGA CGTTTGCAAATATTCGGATTGTGAACAGGCTCCTCAATGAAGTAGGGCCAATGACTGTTCATATTCCGACGGGAGAGAATCTTCATGTATTTGACGTAGC AATGAGGTACATGGAAGCTGGGCAAGACACTGTGGTAATAGCTGGAGCAGAATATGGAAGTGGTAGTTCTAGAGACTGGGCTGCCAAAGGTCCAAAGCTG TTGGGAGTGAAAGCCGTAATTGCCAAGAGTTTTGAAAGAATCCACAGAAGCAATCTGGTGGGGATGGGGATCATCCCGCTGTGTTTCAAGGGCGGTGAGG ATGCTGAAACGTTAGGGCTGACTGGCCGTGAGCGCTACACCATTGACCTTCCAAATAAGATTAGTGAACTGAAGCCTGGACAAGATGTTACTGTCACCAC AGATACGGGCAAGTGTTTCACCTGCACAGCACGCTTTGACACAGAGGTTGAGCTCGCCTATTTTGACCATGGAGGAATTCTGCCGTATGTCCTAAGAAAC CTAGTTAACACTAAACAATAG
AA sequence Show only first row Show all	>Lus10040070 pacid=23173472 polypeptide=Lus10040070 locus=Lus10040070.g ID=Lus10040070.BGIv1.0 annot-version=v1.0 MPIHMSTSAPCSPSSLLRSRLSSCRFPVSLFTSRYGVSSSKFITPSSVAFGNRQNVRYLSFSSSLQSFRYSAHRWNHGVDWRLPLSLRAQTRATSPFVER IEKSISTMASENPYKGILTSLPKPGGGEFGKFFSLPALNDPRIDRLPYSIRILLESAIRNCDNFQVTNDDVEKIIDWENTSPNNVEIPFKPARVLLQDFT GVPAVVDLACMRDAMKKLSSDPKKINPLVPVDLVVDHSVQVDVARTENAVQANMEHEFRRNKERFAFLKWGASAFQNMLVVPPGSGIVHQVNLEYLGRVV FNTDGLLYPDSVVGTDSHTTMINGLGIAGWGVGGIEAEATMLGQPMSMVLPGVVGFELSGELRNGVTATDLVLTVTQMLRKHGVVGKFVEFYGDGMSRLS LVDRATIANMSPEYGATMGFFPVDHVTLEYLKLTGRSDDTVEMIEQYLRANKLFVDYSEPEQERSYTSYMQLDLAEVEPCVSGPKRPHDRVPLKDMKDDW RACLGNSVGFKGYGIPKEEHDKVEKFSFHGQPAELAHGSVVIAAITSCTNTSNPSVMLGAGLVAKKASELGLQVKPWIKTSLAPGSGVVTKYLQKSGLLR YLNEQGFQHVGYGCTTCIGNSGELDESVASAISNNDIIAAAVLSGNRNFEGRIHPLTKANYLASPPLVVAYALAGTVNIDFEKDPIGTGKDGKEVFFRDI WPSNEEIAEVVQSSVLPDMFRSTYEAITNGNHMWNELSIPASFLYSWDPKSTYIHEPPYFKNINMEPPGPHGVKDAYCLLKFGDSVTTDHISPAGSIHKD SPAATYLRERGVDPKDFNSYGSRRGNDEVMARGTFANIRIVNRLLNEVGPMTVHIPTGENLHVFDVAMRYMEAGQDTVVIAGAEYGSGSSRDWAAKGPKL LGVKAVIAKSFERIHRSNLVGMGIIPLCFKGGEDAETLGLTGRERYTIDLPNKISELKPGQDVTVTTDTGKCFTCTARFDTEVELAYFDHGGILPYVLRN LVNTKQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G05710		ACO3	aconitase 3 (.1)		Lus10040070 [exp]	0	1
AT3G59820			LETM1-like protein (.1.2)		Lus10025602 [exp]	6.9	0.9174
AT1G47870	E2F_DP	ATE2FC, ATE2F2,...	ARABIDOPSIS THALIANA HOMOLOG O...		Lus10033151 [exp]	7.5	0.9124
AT3G10380		SEC8, ATSEC8	subunit of exocyst complex 8 (...		Lus10037963 [exp]	9.7	0.8612
AT4G30890		UBP24	ubiquitin-specific protease 24...		Lus10019766 [exp]	10.2	0.9035
AT1G16300		GAPCP-2	glyceraldehyde-3-phosphate deh...		Lus10000872 [exp]	10.9	0.9196
AT5G03730		AtCTR1, SIS1, C...	SUGAR-INSENSITIVE 1, CONSTITUT...		Lus10014368 [exp]	18.4	0.8961
AT4G26270		PFK3	phosphofructokinase 3 (.1)		Lus10006032 [exp]	21.2	0.9068
AT4G01320		ATSTE24	Peptidase family M48 family pr...		Lus10018820 [exp]	22.2	0.8818
AT4G26910			Dihydrolipoamide succinyltrans...		Lus10032633 [exp]	25.5	0.9032
AT4G09820	bHLH	BHLH42, TT8, bH...	TRANSPARENT TESTA 8, basic hel...		Lus10042572 [exp]	26.3	0.8964

Compare expression of checked genes

Lus10040070 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.