Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G20410 803 / 0 CPK9 calmodulin-domain protein kinase 9 (.1) AT1G50700 802 / 0 CPK33 calcium-dependent protein kinase 33 (.1) AT4G04720 785 / 0 CPK21 calcium-dependent protein kinase 21 (.1) AT4G21940 758 / 0 CPK15 calcium-dependent protein kinase 15 (.1.2) AT1G61950 715 / 0 CPK19 calcium-dependent protein kinase 19 (.1) AT1G76040 683 / 0 CPK29 calcium-dependent protein kinase 29 (.1.2) AT5G12180 674 / 0 CPK17 calcium-dependent protein kinase 17 (.1) AT5G19360 674 / 0 CPK34 calcium-dependent protein kinase 34 (.1) AT4G04740 665 / 0 CPK23, ATCPK23 calcium-dependent protein kinase 23 (.1.2) AT4G23650 654 / 0 CDPK6, CPK3 Calcium dependent protein kinase 3, calcium-dependent protein kinase 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021531 [exp] 1093 / 0 AT3G20410 831 / 0.0 calmodulin-domain protein kinase 9 (.1) Lus10032640 [exp] 833 / 0 AT3G20410 790 / 0.0 calmodulin-domain protein kinase 9 (.1) Lus10017251 [exp] 731 / 0 AT1G76040 807 / 0.0 calcium-dependent protein kinase 29 (.1.2) Lus10006777 [exp] 717 / 0 AT4G04720 764 / 0.0 calcium-dependent protein kinase 21 (.1) Lus10020046 [exp] 715 / 0 AT4G04720 764 / 0.0 calcium-dependent protein kinase 21 (.1) Lus10005619 [exp] 699 / 0 AT1G76040 773 / 0.0 calcium-dependent protein kinase 29 (.1.2) Lus10038460 [exp] 673 / 0 AT5G12180 916 / 0.0 calcium-dependent protein kinase 17 (.1) Lus10036050 [exp] 667 / 0 AT5G19360 908 / 0.0 calcium-dependent protein kinase 34 (.1) Lus10017537 [exp] 666 / 0 AT4G23650 803 / 0.0 Calcium dependent protein kinase 3, calcium-dependent protein kinase 6 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G003400 [exp] 806 / 0 AT4G04720 815 / 0.0 calcium-dependent protein kinase 21 (.1) Potri.004G015500 [exp] 793 / 0 AT4G04720 797 / 0.0 calcium-dependent protein kinase 21 (.1) Potri.002G017000 [exp] 720 / 0 AT1G76040 758 / 0.0 calcium-dependent protein kinase 29 (.1.2) Potri.005G245000 [exp] 710 / 0 AT1G76040 729 / 0.0 calcium-dependent protein kinase 29 (.1.2) Potri.009G069200 [exp] 665 / 0 AT5G12180 914 / 0.0 calcium-dependent protein kinase 17 (.1) Potri.001G097400 [exp] 659 / 0 AT4G23650 781 / 0.0 Calcium dependent protein kinase 3, calcium-dependent protein kinase 6 (.1) Potri.001G274700 [exp] 658 / 0 AT5G12180 909 / 0.0 calcium-dependent protein kinase 17 (.1) Potri.003G134000 [exp] 654 / 0 AT4G23650 776 / 0.0 Calcium dependent protein kinase 3, calcium-dependent protein kinase 6 (.1) Potri.010G244800 [exp] 602 / 0 AT5G04870 899 / 0.0 calcium dependent protein kinase 1 (.1) Potri.008G014700 [exp] 596 / 0 AT5G04870 922 / 0.0 calcium dependent protein kinase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0220 [flax] [poplar] EF_hand PF00036 [flax] [poplar] EF-hand_1 EF hand
Representative CDS sequence Show only first row Show all	>Lus10040071 pacid=23173558 polypeptide=Lus10040071 locus=Lus10040071.g ID=Lus10040071.BGIv1.0 annot-version=v1.0 ATGGGTCACTGCATAAGCAAAGGCGGCAGAGGCGGCGATGCTTACCGTTACAACGACAATGCATCCGCCAATCATTATCATCATCATCCCAAATCCCGAG ACATCCCTCCTAATTTCGACAATCACTCCAAACCTGAAGCCGGCGGACACATGCCACCGCAATCCCCCCTCCGAACTCCAAAGAAGCCGGTTTATGCGCC CCCTAGCCCGAAGCCGATCCGGCGCCCGGACACGATCCTGGGAAAAGCGTACGAGGATGTGAAGCTGCAGTACACGATCGGGAAAGAACTTGGGCGGGGC CAATTCGGGGTTACTTACCTCTGCGTGGAGATTTCGACAGGGATGCAGTACGCCTGCAAGTCGATCTCGAAGAGGAAGCTGGTCACAAAGAACGACAAGG AGGATATGAAGAGGGAGATTCAGATAATGCAGCACTTGAGCGGGCAGCCTAACATCGTGGAATTCAAGGGCGCGTACGAGGATAAGCAGTCGGTTCATCT GGTTATGGAGCTGTGCGCAGGCGGAGAGCTCTTCGATCGGATCATTGCGAAAGGGAGTTACAGTGAGAAAGAGGCTGCTGGGATTTGTAGGTCGATTGTG AATGTTGTTCATGCCTGTCATTTCATGGGCGTGATGCATCGTGATCTTAAGCCTGAGAATTTCTTGCTCTCTAGTAAAGATAACTACTCTGCAGTCCTCA AGGCCACTGATTTTGGCCTCTCCGTTTTCATCGAAGAAGGAAAGGTATACCGAGACATAGTTGGGAGCGCGTATTATGTTGCTCCTGAAGTATTGAGACG CAGATATGGCAAGGAAATAGACATCTGGAGTGCTGGGGTTATACTCTATATCCTACTCAGCGGTGTGCCTCCATTTTGGGCTGAAACGGAGAAGGGCATA TTTGATGCGATATTGCAAGGCGACATTGATTTTGAAAGTCACCCCTGGCCATCGATATCGAATAGTGCAAAGGATCTGGTGCGCAAGATGCTCACACAGG ATCCCAAGAGACGCATTACTTCAGCTCAGGTCCTTGAACATCCCTGGCTCAAGGAAGGAGGGGAGGCTTCAGATAAGCCAATAGACAATGCAGTTCTTTC CAGGATGAAGCAATTTAGAGCAATGAATAAACTCAAAAAGCTGGCCCTCAAGATCATTGCTGAGAACCTCTCAAAAGATGAAATTCAAGGTTTGAAAGCT ATGTTTGCCAACATTGACACAGACAACAGTGGCACAATCACGTACGAAGAACTCAAATCTGGGTTGGCTCGCCTGGGATCCAAGCTCTCAGAAGCTGAGG TGAAGCAGCTCATGGATGCTGCTGATGTTGATGGGAACGGGACAATAGATTATATTGAATTCATTACTGCTACCATGCACAGACATAGACTAGAAAGAGA TGAACATCTTTACATGGCCTTCCAGTACTTCGACAAGGATAGCAGTGGATTTATCACCAAAGATGAGCTAGAGACGGCCATGAAGGAGTATGGAATAGGT GATGATGCTACTATCAGAGAAATCATAGCTGAAGTCGATACCGATAATGACGGTAGAATCAATTATGAAGAGTTTTGTGCTATGATGAGGAGTGGAACTC CTCAGCAGGGGAAGCTTTTCTGA
AA sequence Show only first row Show all	>Lus10040071 pacid=23173558 polypeptide=Lus10040071 locus=Lus10040071.g ID=Lus10040071.BGIv1.0 annot-version=v1.0 MGHCISKGGRGGDAYRYNDNASANHYHHHPKSRDIPPNFDNHSKPEAGGHMPPQSPLRTPKKPVYAPPSPKPIRRPDTILGKAYEDVKLQYTIGKELGRG QFGVTYLCVEISTGMQYACKSISKRKLVTKNDKEDMKREIQIMQHLSGQPNIVEFKGAYEDKQSVHLVMELCAGGELFDRIIAKGSYSEKEAAGICRSIV NVVHACHFMGVMHRDLKPENFLLSSKDNYSAVLKATDFGLSVFIEEGKVYRDIVGSAYYVAPEVLRRRYGKEIDIWSAGVILYILLSGVPPFWAETEKGI FDAILQGDIDFESHPWPSISNSAKDLVRKMLTQDPKRRITSAQVLEHPWLKEGGEASDKPIDNAVLSRMKQFRAMNKLKKLALKIIAENLSKDEIQGLKA MFANIDTDNSGTITYEELKSGLARLGSKLSEAEVKQLMDAADVDGNGTIDYIEFITATMHRHRLERDEHLYMAFQYFDKDSSGFITKDELETAMKEYGIG DDATIREIIAEVDTDNDGRINYEEFCAMMRSGTPQQGKLF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G20410		CPK9	calmodulin-domain protein kina...		Lus10040071 [exp]	0	1
AT3G45640		ATMAPK3, ATMPK3	mitogen-activated protein kina...		Lus10018127 [exp]	1.4	0.9010
AT2G33490			hydroxyproline-rich glycoprote...		Lus10035172 [exp]	3.2	0.8830
AT3G20410		CPK9	calmodulin-domain protein kina...		Lus10021531 [exp]	4.9	0.8844
					Lus10025204 [exp]	5.3	0.8999
AT1G78280			transferases, transferring gly...		Lus10010350 [exp]	7.5	0.8573
AT4G35600		Kin4, CX32, CST...	kinase 4, CONNEXIN 32, CAST AW...		Lus10008015 [exp]	9.3	0.8863
AT2G39920			HAD superfamily, subfamily III...		Lus10002714 [exp]	10.1	0.8304
AT4G12020	WRKY	MEKK4, MAPKKK11...	MAPK/ERK KINASE KINASE 4, MITO...		Lus10012027 [exp]	10.5	0.8261
AT5G41210		GSTU12, GST10, ...	glutathione S-transferase THET...		Lus10008020 [exp]	10.8	0.7644
AT2G39920			HAD superfamily, subfamily III...		Lus10040231 [exp]	11.2	0.8004

Compare expression of checked genes

Lus10040071 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.