Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G20395 55 / 2e-09 RING/U-box superfamily protein (.1) AT2G17730 48 / 7e-07 NIP2 NEP-interacting protein 2 (.1.2) AT4G35840 48 / 8e-07 RING/U-box superfamily protein (.1) AT5G66070 45 / 4e-06 RING/U-box superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021524 [exp] 187 / 4e-60 AT3G20395 170 / 7e-53 RING/U-box superfamily protein (.1) Lus10033272 [exp] 52 / 7e-08 AT5G45400 363 / 2e-114 Replication factor-A protein 1-related (.1) Lus10028406 [exp] 47 / 2e-06 AT4G35840 371 / 6e-132 RING/U-box superfamily protein (.1) Lus10041859 [exp] 47 / 2e-06 AT4G35840 371 / 6e-132 RING/U-box superfamily protein (.1) Lus10034736 [exp] 46 / 6e-06 AT5G45400 90 / 3e-20 Replication factor-A protein 1-related (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G435800 [exp] 113 / 3e-31 AT3G20395 153 / 4e-46 RING/U-box superfamily protein (.1) Potri.007G061400 [exp] 49 / 4e-07 AT2G17730 351 / 8e-124 NEP-interacting protein 2 (.1.2) Potri.005G108200 [exp] 49 / 5e-07 AT4G35840 369 / 7e-131 RING/U-box superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10040073 pacid=23173504 polypeptide=Lus10040073 locus=Lus10040073.g ID=Lus10040073.BGIv1.0 annot-version=v1.0 ATGATGGGAAGATGGTTGAGAGAGATGGGGAATTTCTGCATGAGATGTAAAGAAGCCGCAACTTGTTTGTGGTCATTTGATGGGGCAGTGGAGGAGAGTA TTATTGGAGCTTCTTCACTCTTCCTTTCACTACTCACCAACATTCTCCTTGCTTCCCTCACTTGTATCTTTGCTTTAGGAGGTGCTGTAGTTGGTACGAT GGTGGGAGCAATGAAGGGGCAGACAACAGAGACAGGGTTCCTTCGTGGCTCAGTCATAGGCGCTGTTTCTGGTGCCATCACTTCTCTTCAACTCCTCGAA TCCATTTCTGATGGAGAGCAACTCTCCAAGGTGGCGCTATTGAAGAGTTTGGTGAGTGGGAAAGTGTTCATGGAATGGGTAGGACCAGCTGTGTTGAAAG CATACCAGTTCCAGATGAGGGCCATGGAGACCACTTACAGAGAAATGGCTGTGGTGGATCTGACAGAAGGCCCCATAGCCCGCATTACTAGAGACGCTAC TTCGCCTGATCTCCGGCCGATACTTCAGGTGACAGAGCAGAAGTAG
AA sequence Show only first row Show all	>Lus10040073 pacid=23173504 polypeptide=Lus10040073 locus=Lus10040073.g ID=Lus10040073.BGIv1.0 annot-version=v1.0 MMGRWLREMGNFCMRCKEAATCLWSFDGAVEESIIGASSLFLSLLTNILLASLTCIFALGGAVVGTMVGAMKGQTTETGFLRGSVIGAVSGAITSLQLLE SISDGEQLSKVALLKSLVSGKVFMEWVGPAVLKAYQFQMRAMETTYREMAVVDLTEGPIARITRDATSPDLRPILQVTEQK

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G20395			RING/U-box superfamily protein...		Lus10040073 [exp]	0	1
					Lus10042299 [exp]	1.0	0.8566
AT5G03790	HD	LMI1, ATHB51	LATE MERISTEM IDENTITY1, homeo...		Lus10008641 [exp]	8.5	0.8465
AT5G35400			Pseudouridine synthase family ...		Lus10022949 [exp]	10.8	0.7739
AT2G15490		UGT73B4	UDP-glycosyltransferase 73B4 (...		Lus10020124 [exp]	15.5	0.7373
AT5G53390			O-acyltransferase (WSD1-like) ...		Lus10002836 [exp]	15.8	0.7851
AT1G11000		ATMLO4, MLO4	MILDEW RESISTANCE LOCUS O 4, S...		Lus10041893 [exp]	18.0	0.7945
AT5G60970	TCP	TCP5	TEOSINTE BRANCHED 1, cycloidea...		Lus10034679 [exp]	21.8	0.7801
AT4G33180			alpha/beta-Hydrolases superfam...		Lus10038076 [exp]	23.9	0.7993
AT1G53230	TCP	TCP3	TEOSINTE BRANCHED 1, cycloidea...		Lus10002195 [exp]	29.3	0.7530
AT2G26580	YABBY	YAB5	YABBY5, plant-specific transcr...		Lus10030105 [exp]	33.7	0.7756

Compare expression of checked genes

Lus10040073 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.