Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G20390 230 / 1e-77 endoribonuclease L-PSP family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021523 [exp] 319 / 2e-112 AT3G20390 242 / 3e-82 endoribonuclease L-PSP family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G435700 [exp] 254 / 8e-87 AT3G20390 250 / 2e-85 endoribonuclease L-PSP family protein (.1) Potri.011G139600 [exp] 248 / 3e-84 AT3G20390 245 / 2e-83 endoribonuclease L-PSP family protein (.1) Potri.019G019600 [exp] 40 / 0.0009 AT3G04480 941 / 0.0 endoribonucleases (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0534 [flax] [poplar] YjgF-like PF01042 [flax] [poplar] Ribonuc_L-PSP Endoribonuclease L-PSP
Representative CDS sequence Show only first row Show all	>Lus10040074 pacid=23173466 polypeptide=Lus10040074 locus=Lus10040074.g ID=Lus10040074.BGIv1.0 annot-version=v1.0 ATGTCGACTTGGACGGTAGCTTTCAAGCCATTCCACCACGTGCCATCGCTCCTCAACAATCCGCTCCGGCGTACCCAATTCGCCATCGGCAGCTTCTTCG TGGGCTCCTCCTCCACCTTCTCTCGCTCTGCCCGTCTCCTCTCTCCTCCTTTCGCTTCTTTGAGCTCATTCACTATTCCCCCTAAAAAGGAGGCTGTTAA GACGGAGAAGGCTCCAGCTGCTCTCGGTCCTTATTCTCAAGCTATCAAGGTCAACAACCTTTTGTTTGTTTCTGGGGTTTTAGGTCTCATTCCGGAGACT GGAAAATTCGTCTCCGAGAATGTTGAAGATCAGACCGAGCAGATTCTTAAGAACATGGGTGAAATTCTAAAAGCTGGAGGTGGAGACTATTCCTCAGTTG TGAAGACGACTATTATGTTGGCTGATTTGGCTGACTTCAAGAAAGTGAATGAGATCTATGCAAAATACTTCCCTGCCCCATTTCCTGCGCGGTCAACGTA TCAGGTTGCTGCATTGCCCCTGAATGCCAGGATTGAAATCGAGTGCATTGCTGAACTTCCTCAGAAGATTGAAGCTCAGCCTGTCTAG
AA sequence Show only first row Show all	>Lus10040074 pacid=23173466 polypeptide=Lus10040074 locus=Lus10040074.g ID=Lus10040074.BGIv1.0 annot-version=v1.0 MSTWTVAFKPFHHVPSLLNNPLRRTQFAIGSFFVGSSSTFSRSARLLSPPFASLSSFTIPPKKEAVKTEKAPAALGPYSQAIKVNNLLFVSGVLGLIPET GKFVSENVEDQTEQILKNMGEILKAGGGDYSSVVKTTIMLADLADFKKVNEIYAKYFPAPFPARSTYQVAALPLNARIEIECIAELPQKIEAQPV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G20390			endoribonuclease L-PSP family ...		Lus10040074 [exp]	0	1
AT3G49680		ATBCAT-3 ,BCAT3	branched-chain aminotransferas...		Lus10019258 [exp]	2.8	0.8648
AT3G61530		PANB2	Phosphoenolpyruvate carboxylas...		Lus10010142 [exp]	7.4	0.8602
AT4G10630			Glutaredoxin family protein (....		Lus10008270 [exp]	7.9	0.8836
AT3G13560			O-Glycosyl hydrolases family 1...		Lus10039179 [exp]	8.0	0.8732
AT5G48480			Lactoylglutathione lyase / gly...		Lus10009580 [exp]	11.4	0.8713
AT3G09000			proline-rich family protein (....		Lus10004824 [exp]	12.6	0.8570
AT5G58930			Protein of unknown function (D...		Lus10018206 [exp]	13.1	0.8820
AT3G18800			unknown protein		Lus10033505 [exp]	13.3	0.8773
AT4G24670		TAR2	tryptophan aminotransferase re...		Lus10027678 [exp]	14.0	0.8161
AT3G22680		RDM1	RNA-DIRECTED DNA METHYLATION 1...		Lus10039354 [exp]	14.7	0.8668

Compare expression of checked genes

Lus10040074 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.