Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G50670 369 / 1e-131 OTU-like cysteine protease family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021522 [exp] 425 / 4e-154 AT1G50670 372 / 3e-133 OTU-like cysteine protease family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G435500 [exp] 382 / 3e-137 AT1G50670 374 / 4e-134 OTU-like cysteine protease family protein (.1) Potri.011G139500 [exp] 382 / 2e-136 AT1G50670 361 / 3e-128 OTU-like cysteine protease family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0125 [flax] [poplar] Peptidase_CA PF02338 [flax] [poplar] OTU OTU-like cysteine protease
Representative CDS sequence Show only first row Show all	>Lus10040075 pacid=23173480 polypeptide=Lus10040075 locus=Lus10040075.g ID=Lus10040075.BGIv1.0 annot-version=v1.0 ATGGACGGAATCGTTGTGAGAAGGGTCATTCCTTCAGACAATTCTTGTCTCTTCAATGCCGTTGGATATGTTATGGATCATAACAAAAATAAAGCTGCTG AACTCAGACAGGTTATAGCTGCAACAGTGGCAAGTGACCCAGTAAAGTATAATGAAGCATTCCTTGGAAAGCCAAATCAAGAATATTGTGCATGGATTCT TGATTCAGAGAAGTGGGGAGGTGCCATTGAGCTTTCAATATTGGCGGATCACTATGGACGTGAAATTGCAGCTTATGACATTCAAACCACTCGATGTGAT TTGTATGGTCAGGACAAGAAGTACTCGGAGAGAGTGATGCTAATATATGATGGCCTGCATTATGATGCTTTAGCTATGTCCCCGTTTGAAGAAGCCCCAG AGGAGTTTGATCAGACTATATTTCCAGTCCGAATGGACAGGACGATTGGGCTGGTTGAGGGCATAACTCTTGATCTTGTTAGGGATCAACAAAGGAAAAG GAGTTACACAGATACTGCCAACTTCACATTGCGTTGCGGAGTATGCCAGATTGGAGTGATTGGTCAGAAGGAAGCCGTGGAGCATGCACAAGCTACTGGG CATGTCAACTTCCAGGAATATAAATGA
AA sequence Show only first row Show all	>Lus10040075 pacid=23173480 polypeptide=Lus10040075 locus=Lus10040075.g ID=Lus10040075.BGIv1.0 annot-version=v1.0 MDGIVVRRVIPSDNSCLFNAVGYVMDHNKNKAAELRQVIAATVASDPVKYNEAFLGKPNQEYCAWILDSEKWGGAIELSILADHYGREIAAYDIQTTRCD LYGQDKKYSERVMLIYDGLHYDALAMSPFEEAPEEFDQTIFPVRMDRTIGLVEGITLDLVRDQQRKRSYTDTANFTLRCGVCQIGVIGQKEAVEHAQATG HVNFQEYK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G50670			OTU-like cysteine protease fam...		Lus10040075 [exp]	0	1
AT5G02790		GSTL3	Glutathione transferase L3, Gl...		Lus10003994 [exp]	1.4	0.8784
AT3G11620		BAS1	alpha/beta-Hydrolases superfam...		Lus10021300 [exp]	1.7	0.8710
AT3G26980		MUB4	membrane-anchored ubiquitin-fo...		Lus10041539 [exp]	2.8	0.8642
AT2G23090			Uncharacterised protein family...		Lus10011535 [exp]	5.7	0.8449
AT4G20330			Transcription initiation facto...		Lus10002233 [exp]	5.7	0.8857
					Lus10040104 [exp]	8.9	0.8321
AT4G35905			unknown protein		Lus10028420 [exp]	8.9	0.8517
AT5G58060		ATYKT61, ATGP1,...	SNARE-like superfamily protein...		Lus10036297 [exp]	10.4	0.8445
AT5G61310			Cytochrome c oxidase subunit V...		Lus10010008 [exp]	11.6	0.8456
AT3G29130			unknown protein		Lus10000252 [exp]	12.6	0.7811

Compare expression of checked genes

Lus10040075 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.