Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G50660 672 / 0 unknown protein AT3G20350 582 / 0 unknown protein AT3G11590 130 / 3e-31 unknown protein AT1G11690 109 / 1e-26 unknown protein AT1G64180 80 / 2e-15 intracellular protein transport protein USO1-related (.1) AT5G22310 79 / 2e-15 unknown protein AT2G46250 65 / 1e-10 myosin heavy chain-related (.1) AT1G64690 44 / 0.0002 BLT BRANCHLESS TRICHOMES, branchless trichome (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021521 [exp] 1107 / 0 AT1G50660 750 / 0.0 unknown protein Lus10032637 [exp] 655 / 0 AT1G50660 625 / 0.0 unknown protein Lus10043111 [exp] 640 / 0 AT1G50660 616 / 0.0 unknown protein Lus10021324 [exp] 131 / 2e-31 AT3G11590 530 / 3e-180 unknown protein Lus10017001 [exp] 129 / 1e-30 AT3G11590 587 / 0.0 unknown protein Lus10028746 [exp] 125 / 7e-30 AT5G41620 497 / 4e-170 unknown protein Lus10002069 [exp] 123 / 1e-29 AT1G50660 147 / 6e-38 unknown protein Lus10017543 [exp] 123 / 5e-29 AT5G41620 500 / 6e-170 unknown protein Lus10013311 [exp] 115 / 2e-26 AT3G11590 332 / 1e-105 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G090100 [exp] 676 / 0 AT1G50660 689 / 0.0 unknown protein Potri.004G015800 [exp] 384 / 3e-124 AT1G50660 390 / 1e-126 unknown protein Potri.011G003200 [exp] 360 / 1e-114 AT1G50660 350 / 1e-110 unknown protein Potri.004G199500 [exp] 147 / 9e-37 AT3G11590 399 / 6e-131 unknown protein Potri.016G074300 [exp] 145 / 4e-36 AT3G11590 560 / 0.0 unknown protein Potri.009G160900 [exp] 133 / 2e-32 AT3G11590 399 / 9e-132 unknown protein Potri.006G207800 [exp] 129 / 4e-31 AT3G11590 582 / 0.0 unknown protein Potri.003G135000 [exp] 119 / 1e-27 AT5G41620 494 / 1e-167 unknown protein Potri.001G096200 [exp] 113 / 6e-26 AT5G41620 523 / 6e-180 unknown protein Potri.014G093400 [exp] 102 / 3e-22 AT5G41620 347 / 8e-111 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10040076 pacid=23173503 polypeptide=Lus10040076 locus=Lus10040076.g ID=Lus10040076.BGIv1.0 annot-version=v1.0 ATGAAGGTCACTTCCGGGAAACCGCATCCGTCAGCGGCGCTACTAGGGACTTCCTCCGTTCTTTCTTCAAAGCTCGTTTCCAATAACTCAAATCAGAAAA ATCCCGTCTCAGATCTTGCCAGGCAGCACCGCCGCAGGACCCGGAGCCTGACCCGGTTGAAGCGGGTCACGCCTTCTGTCGGGCGGCGAAGCAGACCCGA GACCCCTTTGCTGAAATGGAAAGTTGAGGAGGGCGGTGAGCCAAATGTTGTGGCTGCAGAGCACAAGGACCATACGGTGGCAGAAGAAGAGAAGCTTAGT AAGAGTAAACAGGAAGAGGAGAAAAGAGGACGGAGGCAGAGGAACAGAAGTGTCAACTCTGTTTCTGCTAGGAAGCTTGCTGCTGGGTTGTGGAGGTTGC AGTCACCGGAGACCGCGGTTGGCGGTGGCGGATTAGGAGAACGGAGGAGGAGGGATGTATTGGGTTTTCAGCCAGGGGCAGCTCATGTCGTCCCCCCTCG GACTGACTCAAAGGATCCATTACACAGCCATGTTCCTTTGTCTGGTATGAAGAACAAGTTCTCCTGTAAGCTTGAACCTCCATTCCAGTTTTCCAACTCT GCAATGGAGGGTGCAACCAAGTGGGATCCTGTCTGCTTTGAGACACCAGATGAGGCACGCCAGATATACGGCCACATGCAACAACCTGATCAGCATGTAA CCGCTGTATCAGTGGTTTCTGCCCTTGAAACTGAGCTTGAACAAGCTCGAGCACGCATCCAGGAGCTCGAAACAGAACGTCGATCATCCCAAAAGAAACT TGAGCACTTTCTGAAGAAAGTCAGTGAGGAAAGAGCTGCATGGAGGAGCAGAGAGCACGATAAAGTTCGTGCATTTATTGATGACGCCAAGACTGATTTA AGTCGTGAAAGGAAAAATCGTCAGAGATTGGAGATTTTGAACTCGAAATTGGTCAATGAGCTGGCCGATGCAAAGGTATCAGTGAAGCGACTCATGCAGG ACTACGAAAAGGAAAGAAAGAATAGAGAATTGATTGAGGAAGTGTGTGATGAGCTAGCCAAGGAAATCGAAGATGACAAGGCTGAAATTGAAGCAATAAA GAGGGAATCCATGAACCTGCGGGAAGAAGTAGATGATGAAAGGAAGATGCTGCAGATGGCTGAGGTATGGCGTGAAGAACGTGTTCAGATGAAGCTGGTC GATGCCAAAGTGGCTCTTGAGGACAGGTATTCTCAGATGAACAAGCTTGTAGCAGATTTGGAAAGTTTTCTAAGTTCGAGAGGTGCAATTTCAGAAATTA GACAAGCCGAATCTCTAATGAGAGTTGCAGCCACCATTGATATTCAAGAAGTAAAGGAGTTCACACATGAGCCCTCTAACCCAGATGATATTTTCGCTGT TCTTGAGGAAGTTAACTGTGGTGAGCCAAATGAGAGAGATATTGAACAATGTGCTGCTTTTAGTCCTGCTAGTCGTTCGTCCGAGTCCAATCTAATTACT AAGGACTACAATCACAGGCATTTGAATGCTTATGTGAGTAAGAATAAGGAGATAGAAGAGGAGGAAGAAGATGATGAAAGTGGGTGGGAAACTGTGAGCC ATGTTGAGGATCAAGGCTCGAGTTTCTCGCCAGATGGAAGTATTCGATCAGTCAGTAAATATCAGCGGGACAGTAATGTATCAGGGAGTGGCACTGAATG GGAAGACAACATTTGCAAGGACGTCCCCATGGCAGAAATTGATGAGCTATGCTCTATGCCTCCTAGTAGGCAGTCGAAAAAGGTATCAGCAATTGCAAGG CTCTGGAAGTCGGGCAGTAATGGAGAGAACTTGAAGATAATATCAGTTGATGGAATGAATGGTAGGTTCTCAAATGGAAGAAAATCTAGTGCAGGCATTG TATCGCCTGAGCAGGGGTCAGTTAAAGATGGAGGAGGAGCATTCAGCCCTTCGGATTTCGTAAATCAATGGAGTTCTTCACCAGAATCAGGGAACCCCCA CATAACAAGAGGAATGAAAGGATGCATTGAATGGCCGCGAGGGGTCCAGAAGCACAGTCTGAAGTCAAAGCTGATGGAGGCAAGGATGCAGAACCAGAAA CTCCAGCTGCGCCATGTACTGAAGCAGAAGATTTAG
AA sequence Show only first row Show all	>Lus10040076 pacid=23173503 polypeptide=Lus10040076 locus=Lus10040076.g ID=Lus10040076.BGIv1.0 annot-version=v1.0 MKVTSGKPHPSAALLGTSSVLSSKLVSNNSNQKNPVSDLARQHRRRTRSLTRLKRVTPSVGRRSRPETPLLKWKVEEGGEPNVVAAEHKDHTVAEEEKLS KSKQEEEKRGRRQRNRSVNSVSARKLAAGLWRLQSPETAVGGGGLGERRRRDVLGFQPGAAHVVPPRTDSKDPLHSHVPLSGMKNKFSCKLEPPFQFSNS AMEGATKWDPVCFETPDEARQIYGHMQQPDQHVTAVSVVSALETELEQARARIQELETERRSSQKKLEHFLKKVSEERAAWRSREHDKVRAFIDDAKTDL SRERKNRQRLEILNSKLVNELADAKVSVKRLMQDYEKERKNRELIEEVCDELAKEIEDDKAEIEAIKRESMNLREEVDDERKMLQMAEVWREERVQMKLV DAKVALEDRYSQMNKLVADLESFLSSRGAISEIRQAESLMRVAATIDIQEVKEFTHEPSNPDDIFAVLEEVNCGEPNERDIEQCAAFSPASRSSESNLIT KDYNHRHLNAYVSKNKEIEEEEEDDESGWETVSHVEDQGSSFSPDGSIRSVSKYQRDSNVSGSGTEWEDNICKDVPMAEIDELCSMPPSRQSKKVSAIAR LWKSGSNGENLKIISVDGMNGRFSNGRKSSAGIVSPEQGSVKDGGGAFSPSDFVNQWSSSPESGNPHITRGMKGCIEWPRGVQKHSLKSKLMEARMQNQK LQLRHVLKQKI

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G50660			unknown protein		Lus10040076 [exp]	0	1
AT4G18820			AAA-type ATPase family protein...		Lus10015234 [exp]	2.0	0.8912
AT3G22550			Protein of unknown function (D...		Lus10012417 [exp]	5.5	0.8597
AT5G59010			Protein kinase protein with te...		Lus10040719 [exp]	17.7	0.8534
AT4G20940			Leucine-rich receptor-like pro...		Lus10038544 [exp]	19.4	0.8656
AT3G56370			Leucine-rich repeat protein ki...		Lus10025139 [exp]	20.6	0.8625
AT5G14620		DMT7, DRM2	domains rearranged methyltrans...		Lus10032136 [exp]	21.2	0.8156
AT4G27490			3'-5'-exoribonuclease family p...		Lus10037395 [exp]	23.0	0.8370
AT5G41760			Nucleotide-sugar transporter f...		Lus10036726 [exp]	23.3	0.7936
AT1G70280			NHL domain-containing protein ...		Lus10029176 [exp]	25.4	0.8570
AT4G35930			F-box family protein (.1)		Lus10041876 [exp]	27.4	0.8643

Compare expression of checked genes

Lus10040076 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.