Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G20490 149 / 9e-40 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019628 [exp] 587 / 0 AT3G20490 239 / 3e-73 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G139200 [exp] 237 / 6e-72 AT3G20490 261 / 1e-81 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10040077 pacid=23173409 polypeptide=Lus10040077 locus=Lus10040077.g ID=Lus10040077.BGIv1.0 annot-version=v1.0 ATGGCCGATATAGAACCTCCGTCCTTCTTTCTCGACCTGGATTTTGACGCTGAACCTCAACTGTGTGATCCTCCACCACCGTCGCCGCCCAGCCCTCCGG CATGCCGACCACTATGGGAACAAGACGAAGAAGATCTCGAACTGCAGGTCAAGGATTCTGAGGACGAAGATGAAAAACCCCTTTCCACAGTTCAGATCAA TACCACCCCTCTTTTTAATGCTCCTCAGATCCTTAAGCGCCTCAGGCGAGTAGGAGTACTTCCGATCCAGGAACCAAAAACGAAGCTAAAAAATGAATTG GGTTCTCTACCATCCCAGATTTCCGACGGTGACATTGAAGATTTCTCTTCTGAGGACGACGATTTCGTTGCAGATTTGGTGCTTCCATCAAGGGATTACA ACTCGGCATGTAGTAGTTCAAAAGCTTCACTTGGTGGATCAGGAGTTTTAACACCTCAGCCATCAGCTCAGACAATCTCAAAGCTAAAGGGTAAGGCTTT CGACTTGCCAGCTTCATCAAGTTTAGAGACGGGTCACAGTGGATTGGTGTTTCCAAAGTCAACTGCCAGTTCTCTCAGAAGGTTTCGGCTGAATGATTCG GATGAAGAGCCTGCGAAAATGAATAGAAAACCTGCAAAGGTTGTGTCACAATCGACTAGACAATGCTCCTCCACTGCAACTGGACAGCGTGGGAATCAGC AGCAGGTACCAATCCTAAGATTGAGGACCTCTGGAAGAACTTTCGTCCTGTTCAAAGTGCTCCCATCGAAACACTTGCTTTGGATGCATTCTGCAATGAA TAAGAAGTCAGCTACAAGACGTGGAGATGGTGCTTATGCAAATAACACCGTACCGAATCATCATCGTCATCATCAGGATCCCAGTGTCATGGTGGAATCA GAACAAAGCCAGAAGGGGAATGCCCATTTTTCCCCAGCTCATCACTATTTCTTCCATGATGATGCAAGCATTCGGGTTTTAGTACAAAATCGGTTGCCCC ACTTATTCCCTGTGGGCGTGGTTAAAGCCAGAGGAAATGAGCAGCCAAGTGAACACCTTGTTGACTACAGGTATCTCGCTCCGTTCTTACTTTCTGCTGG ACCGTATCGTACTGTGCTCACCCTTCCCAATCATTTCAGGAGCCAATTTGGGGGAGCCTCTAAAAGTGGTGGAACTAATGGAAACAACATGGAGAAAGGC TCCACTAGTGGAAGAAAGAGAGCAAAGAAATCAGAATCTTCTCAGCGATGGGTGGACCCTAGAACAACAGCTAGTGTTCCCAAGGATGCTGGTAGAAGAC GAGTTCAAGCAAGTGGTCAAGCCGCTGCTGCTGGCCATTGGTTTACATCCCCAGAAGGGAGAAAGGTTTACGTCGCCAACAGCGGACAGGAGTTCACGGG ACAAATTGCCTACAGACAATTAAAAAGGGATTCTGGAGGATACAGAAAGTCGAAAAAGAAGAGCACCAGCAAGAGGAAGAAAACACGTTCAGCTTGA
AA sequence Show only first row Show all	>Lus10040077 pacid=23173409 polypeptide=Lus10040077 locus=Lus10040077.g ID=Lus10040077.BGIv1.0 annot-version=v1.0 MADIEPPSFFLDLDFDAEPQLCDPPPPSPPSPPACRPLWEQDEEDLELQVKDSEDEDEKPLSTVQINTTPLFNAPQILKRLRRVGVLPIQEPKTKLKNEL GSLPSQISDGDIEDFSSEDDDFVADLVLPSRDYNSACSSSKASLGGSGVLTPQPSAQTISKLKGKAFDLPASSSLETGHSGLVFPKSTASSLRRFRLNDS DEEPAKMNRKPAKVVSQSTRQCSSTATGQRGNQQQVPILRLRTSGRTFVLFKVLPSKHLLWMHSAMNKKSATRRGDGAYANNTVPNHHRHHQDPSVMVES EQSQKGNAHFSPAHHYFFHDDASIRVLVQNRLPHLFPVGVVKARGNEQPSEHLVDYRYLAPFLLSAGPYRTVLTLPNHFRSQFGGASKSGGTNGNNMEKG STSGRKRAKKSESSQRWVDPRTTASVPKDAGRRRVQASGQAAAAGHWFTSPEGRKVYVANSGQEFTGQIAYRQLKRDSGGYRKSKKKSTSKRKKTRSA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G20490			unknown protein		Lus10040077 [exp]	0	1
AT3G14890			phosphoesterase (.1.2)		Lus10037922 [exp]	48.2	0.7323
AT3G17030			Nucleic acid-binding proteins ...		Lus10016902 [exp]	61.3	0.7434
AT2G29680		CDC6, ATCDC6	cell division control 6 (.1.2)		Lus10011627 [exp]	62.6	0.7433
AT3G12530		PSF2	PSF2 (.1.2)		Lus10000955 [exp]	75.8	0.7047
AT4G25540		ATMSH3, MSH3	homolog of DNA mismatch repair...		Lus10027453 [exp]	107.3	0.6602
AT5G63770		ATDGK2	diacylglycerol kinase 2 (.1.2)		Lus10012719 [exp]	117.7	0.7165
AT2G36010	E2F_DP	ATE2FA, E2F3	E2F transcription factor 3 (.1...		Lus10004217 [exp]	135.6	0.7081
AT1G20720			RAD3-like DNA-binding helicase...		Lus10012249 [exp]	143.7	0.7042
AT5G49830		EXO84B	exocyst complex component 84B ...		Lus10024928 [exp]	160.1	0.7015
AT3G02310	MADS	AGL4, SEP2	SEPALLATA 2, AGAMOUS-like 4, K...		Lus10004638 [exp]	161.8	0.6505

Compare expression of checked genes

Lus10040077 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.