Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G11660 912 / 0 heat shock protein 70 (Hsp 70) family protein (.1) AT1G79920 790 / 0 AtHsp70-15 heat shock protein 70-15, Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2) AT1G79930 769 / 0 AtHsp70-14, HSP91 heat shock protein 91 (.1.2) AT5G28540 294 / 2e-89 BIP1 heat shock protein 70 (Hsp 70) family protein (.1) AT5G42020 294 / 3e-89 BIP2, BIP luminal binding protein, Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2) AT5G02500 291 / 2e-88 AtHsp70-1, AT-HSC70-1, HSP70-1, HSC70-1 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2) AT1G16030 288 / 2e-87 HSP70B heat shock protein 70B (.1) AT3G12580 285 / 5e-86 ATHSP70, HSP70 ARABIDOPSIS HEAT SHOCK PROTEIN 70, heat shock protein 70 (.1) AT1G09080 283 / 3e-85 BIP3 binding protein 3, Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2) AT3G09440 281 / 7e-85 Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019627 [exp] 1444 / 0 AT1G11660 916 / 0.0 heat shock protein 70 (Hsp 70) family protein (.1) Lus10037529 [exp] 780 / 0 AT1G79930 1313 / 0.0 heat shock protein 91 (.1.2) Lus10011461 [exp] 771 / 0 AT1G79930 1282 / 0.0 heat shock protein 91 (.1.2) Lus10037531 [exp] 765 / 0 AT1G79920 1269 / 0.0 heat shock protein 70-15, Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2) Lus10011463 [exp] 677 / 0 AT1G79920 1167 / 0.0 heat shock protein 70-15, Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2) Lus10002319 [exp] 307 / 3e-94 AT3G12580 1160 / 0.0 ARABIDOPSIS HEAT SHOCK PROTEIN 70, heat shock protein 70 (.1) Lus10017306 [exp] 297 / 9e-90 AT5G28540 1169 / 0.0 heat shock protein 70 (Hsp 70) family protein (.1) Lus10005953 [exp] 293 / 5e-89 AT5G02500 1207 / 0.0 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2) Lus10025333 [exp] 278 / 3e-83 AT5G02500 1236 / 0.0 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G139100 [exp] 1120 / 0 AT1G11660 990 / 0.0 heat shock protein 70 (Hsp 70) family protein (.1) Potri.004G016700 [exp] 943 / 0 AT1G11660 1025 / 0.0 heat shock protein 70 (Hsp 70) family protein (.1) Potri.003G055800 [exp] 768 / 0 AT1G79920 1283 / 0.0 heat shock protein 70-15, Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2) Potri.001G180100 [exp] 637 / 0 AT1G79920 1262 / 0.0 heat shock protein 70-15, Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2) Potri.013G018000 [exp] 293 / 6e-89 AT5G28540 991 / 0.0 heat shock protein 70 (Hsp 70) family protein (.1) Potri.003G143600 [exp] 292 / 1e-88 AT5G42020 1205 / 0.0 luminal binding protein, Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2) Potri.001G042600 [exp] 291 / 1e-88 AT3G12580 1061 / 0.0 ARABIDOPSIS HEAT SHOCK PROTEIN 70, heat shock protein 70 (.1) Potri.001G087500 [exp] 291 / 2e-88 AT5G42020 1184 / 0.0 luminal binding protein, Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2) Potri.010G206600 [exp] 290 / 5e-88 AT3G12580 1181 / 0.0 ARABIDOPSIS HEAT SHOCK PROTEIN 70, heat shock protein 70 (.1) Potri.008G054000 [exp] 287 / 4e-87 AT5G02500 1160 / 0.0 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0108 [flax] [poplar] Actin_ATPase PF00012 [flax] [poplar] HSP70 Hsp70 protein
Representative CDS sequence Show only first row Show all	>Lus10040078 pacid=23173420 polypeptide=Lus10040078 locus=Lus10040078.g ID=Lus10040078.BGIv1.0 annot-version=v1.0 ATGAGTGTGGTGGGGTTTGACATTGGTAATGAGAACTGTGTTATTGCTGTCGTGAAACAACGAGGCATTGATGTGTTGTTGAATGATGAATCAAAACGCG AAACCCCAGCCGTGGTGTGTTTTGGGGAGAAACAGAGGTTTCTTGGGTCTTCAGGTGCTGCTTCTGCTATGATGAATCCAAGATCTACTGTAACTCAAGT GAAGAGATTGATTGGCAGGAAGTTCAATGATCCTCAAGTTAAAATGGACCTTAAAATTGTCCCATTTGAAACCTCTGAAGCAGAAGATGGTACCATTTTG ATTAACTTGAAGTACTTGGGTGAGACTCACTCATTCGCGCCTGTCCAAATTTTAGCAATGCTATTTTCACATTTGAAAGATGTAGCAGAGAAGAACTTGG AAATGCCCATTGCAGATTGTGTGATTGGAATACCTTCGTACTTTACGGATGTGCAGAGACGGGCATATATGGATGCTGCAATAATTGCAGGTTTGAAGCC TTTGAGACTGATGCATGACTGTGCTGCAACTGCACTAAGTTATGGTATTTACAAAACCGACTTCTCCAATACTGGGCCAACATATGTGACTTTTATCGAT ATTGGTCATTGTGATACTCAGGTCTCTGTTGTCTCATTCGAGGTTGGCCATATGCGAATAATGTCACATGCTTTTGATAGCAATTTGGGTGGGAGGGACT TTGATGAGGTCTTATTTGGTTACTTCGCATCTCAGTTTAAGGAGCACTACAAAATAGATGTATATTCTAATCTTAGGGCTTGTATTAGATTAAGAGCAGC ATGTGAAAAGTTAAAGAAGGTTCTAAGTGCAAATTCAGAGGCACCCTTAAACATTGAATGCTTAATGGAAGAGATAGATGTTAAGAGTTCCATCAAGAGG GATGAATTTGAGAGATTGTCATCTGGTTTACTGGAGAGAGTTGCCATTCCTTGCAAGAAAGCCTTACTTGATGCTGGGGTCTCCGTGGAAAAGCTTCAAT CGGTTGAGCTTGTGGGATCTGGTTCTAGAATACCAGCAATTGCTAAGTTATTAACTTCTTTATTTGGAAGAGAACCTAGTCGGACATTGAATGCAAGTGA ATGTGTGTCTCGTGGGTGTGCCCTGCAATGTGCAATGCTTAGTCCAGTTTTTCGAGTAAGAGAATATGATGTTCAAGATTCAAATCCTTTCTCCATAGGC TTCTCATCAGACGGAGGCCCAGTTTTGACGTCATCATCTAATGGCATACTGTTCCCTAGAGGCTTATCCATTCCAAGTGCCAAAGTATTGACGTTTCAAA GGAGTAGTCAGTTCCACTTGGATGCGTCCTATGCCGATCCAAATGAACTTCCAGCTGGTGTCTCTTCCAGGATCTGTTCTTTCACGATTGGTCCTTTTCA AAGCTCCAATGGTGATAAGGCGAGGGTTAAGGTTAAAGTTAAGCTAAATCTACATGGCATCGTCACCATTGAGTCAGCTATGGTTGTAATTGGCGATGCT GATGATGCTGGTATGCACTCTCCATCTTCAGATGCATCAGCTGACAGTTCAATGAGAGATAGAGGCAATCGCAGGATCCAGATACCAGTTAGTGAAACAG TGTATGGTGGAATGACAACAGCTCAGCTTTCGGAAGCCCACAAGAAGGAACTTGAACTGACTCAACAAGACAGAACCGTGGAACAAGCCAAAGAAAGGAA GAATGCCTTGGAGTCCTATGTTTATGAAATGCGTAATAAGCTTTTTAACACGTTGGGGAGCTTTGCAAGCAACGAGGAAAGGGAGGGAATTTCAATGAGC CTACAAGAGACAGAGGAATGGCTTTATGGAGACGGAGACGATGAAACTGAGAATGCTTATACCTCAAAGATGCAAGACCTGAAACAGTTGGTGGATCCAG TTGAGATTCGACATAAAGAAGAGGAAGCTAGGGCGTATGCCACTAGAGAATTGCATAATTCCATTGCAGAGTTTCGAGCTTTGTCCGAGTCTCTTCCATA TGAAGACAGAGAACTGATGATGAACGAGTGCAATAAAGCAGAACATTGGGTGAGAACAGGAATGCAGCAACAAGAGTCCATGCCTAAAGATATTGACCCT GTGCTCTGGTCCAGGGATATCAACAACAGAACAGATGACCTAAACAAGATATGGAAGCATATACTGAGAAAGAGGGCGTCCCCAGCGAAGTCAGGGGACA GCAAAGGTTGA
AA sequence Show only first row Show all	>Lus10040078 pacid=23173420 polypeptide=Lus10040078 locus=Lus10040078.g ID=Lus10040078.BGIv1.0 annot-version=v1.0 MSVVGFDIGNENCVIAVVKQRGIDVLLNDESKRETPAVVCFGEKQRFLGSSGAASAMMNPRSTVTQVKRLIGRKFNDPQVKMDLKIVPFETSEAEDGTIL INLKYLGETHSFAPVQILAMLFSHLKDVAEKNLEMPIADCVIGIPSYFTDVQRRAYMDAAIIAGLKPLRLMHDCAATALSYGIYKTDFSNTGPTYVTFID IGHCDTQVSVVSFEVGHMRIMSHAFDSNLGGRDFDEVLFGYFASQFKEHYKIDVYSNLRACIRLRAACEKLKKVLSANSEAPLNIECLMEEIDVKSSIKR DEFERLSSGLLERVAIPCKKALLDAGVSVEKLQSVELVGSGSRIPAIAKLLTSLFGREPSRTLNASECVSRGCALQCAMLSPVFRVREYDVQDSNPFSIG FSSDGGPVLTSSSNGILFPRGLSIPSAKVLTFQRSSQFHLDASYADPNELPAGVSSRICSFTIGPFQSSNGDKARVKVKVKLNLHGIVTIESAMVVIGDA DDAGMHSPSSDASADSSMRDRGNRRIQIPVSETVYGGMTTAQLSEAHKKELELTQQDRTVEQAKERKNALESYVYEMRNKLFNTLGSFASNEEREGISMS LQETEEWLYGDGDDETENAYTSKMQDLKQLVDPVEIRHKEEEARAYATRELHNSIAEFRALSESLPYEDRELMMNECNKAEHWVRTGMQQQESMPKDIDP VLWSRDINNRTDDLNKIWKHILRKRASPAKSGDSKG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G11660			heat shock protein 70 (Hsp 70)...		Lus10040078 [exp]	0	1
AT2G46180		GC4	golgin candidate 4 (.1)		Lus10041081 [exp]	2.6	0.9095
AT2G46180		GC4	golgin candidate 4 (.1)		Lus10036406 [exp]	4.5	0.8908
AT1G75850		VPS35B	VPS35 homolog B (.1)		Lus10013565 [exp]	6.7	0.8710
AT3G48670		RDM12, IDN2	RNA-DIRECTED DNA METHYLATION 1...		Lus10000949 [exp]	6.7	0.8451
AT4G24550			Clathrin adaptor complexes med...		Lus10003537 [exp]	8.5	0.8545
AT2G41830			Uncharacterized protein (.1)		Lus10026298 [exp]	8.9	0.8540
AT4G17380		MSH4, ATMSH4	ARABIDOPSIS MUTS HOMOLOG 4, M...		Lus10007489 [exp]	10.4	0.8565
AT5G43710			Glycosyl hydrolase family 47 p...		Lus10041170 [exp]	11.3	0.8546
AT1G55250		HUB2, HISTONEMO...	histone mono-ubiquitination 2 ...		Lus10024057 [exp]	11.3	0.8672
AT5G64150			RNA methyltransferase family p...		Lus10015342 [exp]	11.5	0.8551

Compare expression of checked genes

Lus10040078 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.