Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G20500 679 / 0 ATPAP18, PAP18 purple acid phosphatase 18 (.1) AT3G52820 509 / 4e-180 ATPAP22, PAP22 purple acid phosphatase 22 (.1) AT3G52780 491 / 5e-173 ATPAP20, PAP20 Purple acid phosphatases superfamily protein (.1.2) AT3G52810 486 / 1e-170 ATPAP21, PAP21 purple acid phosphatase 21 (.1) AT5G34850 319 / 6e-105 ATPAP26, PAP26 purple acid phosphatase 26 (.1) AT4G36350 311 / 9e-102 ATPAP25, PAP25 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 25, purple acid phosphatase 25 (.1) AT1G56360 308 / 7e-101 PAP6, ATPAP6 purple acid phosphatase 6 (.1) AT2G16430 297 / 3e-96 ATPAP10, PAP10 purple acid phosphatase 10 (.1.2) AT2G27190 297 / 3e-96 ATPAP12 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 1, purple acid phosphatase 12 (.1) AT3G07130 293 / 4e-94 ATPAP15, PAP15 purple acid phosphatase 15 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019625 [exp] 849 / 0 AT3G20500 673 / 0.0 purple acid phosphatase 18 (.1) Lus10017056 [exp] 506 / 9e-179 AT3G52780 562 / 0.0 Purple acid phosphatases superfamily protein (.1.2) Lus10021377 [exp] 503 / 3e-177 AT3G52820 603 / 0.0 purple acid phosphatase 22 (.1) Lus10021376 [exp] 488 / 1e-172 AT3G52780 539 / 0.0 Purple acid phosphatases superfamily protein (.1.2) Lus10021378 [exp] 492 / 3e-167 AT3G52820 597 / 0.0 purple acid phosphatase 22 (.1) Lus10017059 [exp] 434 / 8e-151 AT3G52820 536 / 0.0 purple acid phosphatase 22 (.1) Lus10008054 [exp] 339 / 2e-112 AT5G34850 774 / 0.0 purple acid phosphatase 26 (.1) Lus10017057 [exp] 331 / 8e-112 AT3G52780 375 / 1e-129 Purple acid phosphatases superfamily protein (.1.2) Lus10039978 [exp] 336 / 7e-111 AT5G34850 784 / 0.0 purple acid phosphatase 26 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G138200 [exp] 689 / 0 AT3G20500 696 / 0.0 purple acid phosphatase 18 (.1) Potri.001G423700 [exp] 687 / 0 AT3G20500 701 / 0.0 purple acid phosphatase 18 (.1) Potri.003G030700 [exp] 499 / 6e-176 AT3G52820 607 / 0.0 purple acid phosphatase 22 (.1) Potri.006G063700 [exp] 329 / 1e-108 AT5G34850 798 / 0.0 purple acid phosphatase 26 (.1) Potri.018G024800 [exp] 327 / 1e-107 AT5G34850 742 / 0.0 purple acid phosphatase 26 (.1) Potri.018G123700 [exp] 317 / 1e-103 AT5G34850 762 / 0.0 purple acid phosphatase 26 (.1) Potri.004G160100 [exp] 314 / 1e-102 AT2G16430 779 / 0.0 purple acid phosphatase 10 (.1.2) Potri.003G176000 [exp] 316 / 3e-102 AT4G13700 739 / 0.0 purple acid phosphatase 23 (.1) Potri.002G029300 [exp] 312 / 5e-102 AT2G16430 693 / 0.0 purple acid phosphatase 10 (.1.2) Potri.005G233400 [exp] 308 / 8e-101 AT2G16430 700 / 0.0 purple acid phosphatase 10 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0163 [flax] [poplar] Calcineurin PF00149 [flax] [poplar] Metallophos Calcineurin-like phosphoesterase
Representative CDS sequence Show only first row Show all	>Lus10040079 pacid=23173520 polypeptide=Lus10040079 locus=Lus10040079.g ID=Lus10040079.BGIv1.0 annot-version=v1.0 ATGAGCATGGACCCAAATTTGGCTTCCGCACTTGTTCTGCTGCTATCTCTATTCCTAGCTGCTGTCTCCTCCGAATATGTGAGGCCGCCACCTAGGAAAA CCCTTGAATTTCCATGGAGTAAGAAAGACTCCTCCCATCCTCAGCAGGTGCACATCTCTTTAGCTGGGGAGAAGCACATCCGAATCTCGTGGGTCACGGA TGATAAATCCGCTCCTTCCACTGTCAAATATGGAACTTCTTCTGGGAAATACGATGCTACATCTCATGGAGAAAGCACTTCCTATACGTATCTGTTTTAC AGTTCAGGGAAGATCCATCATACTGTCATTGGTCCACTTCAACCCAACACCCTATACTTTTACCGGTGCGGTGGACAAGGCATCGAGTACCAGCTCAAAA CCCCTCCTGACCGTTTCCCTATGACCTTTGCTGTGGCTGGTGATTTAGGGCAAACTGGCTGGACCCAATCCACCTTAGCCCATATTGACCAATGCAAATA TGATGTGCATCTACTTCCTGGAGATCTCTCATATGCTGATTACATGCAGCACCGTTGGGACACTTTTGGTCAACTGGTTGAACCATTAGCCAGTTCTAGG CCTTGGATGGTGACACAAGGAAACCACGAAAAGGAAAACATACCACTTCTGGTTGATGGTTTCGAGTCCTATAACTCCAGATGGAAGATGCCATATGAAG AGAGTGGATCAAGTTCAAATCTTTACTATTCTTTTGAAATAGCTGGAGCTCATATTATCATGCTTGGCTCGTATACTGATTATGACAAATACTCGGATCA ATATAACTGGCTCAAGGCTGATCTTGCCAAGGTTGATCGGGAGAAGACACCTTGGCTCCTTGTGCTCTTTCATGTCCCTTGGTACAACAGTAATAGTGCT CATCAAGGTGAAGGAGATGACATGAAAGCAGTTATGGAGCCATTACTATATGATGCTAAAGTGGATATGGTGCTCGCAGGCCATGTACATGCATATGAGC GCACGGAGCGAGTGTATAATGGGAACTCTGATCCCTGTGGTCCTGTGTATATAACCATTGGAGACGGAGGAAACAAAGAAGGTTTAGCCACAAAGTACAT GGATCCTCATCCAAAATGGTCAGCGTTCCGAGAGGCAAGCTTTGGCCATGGTGAGTTCCAAATCTCAAACTCCACTCATGCGTTCTGGAGTTGGCACAGG AACGATGATGATGAACCTGTTAGATCCGATTCGATATGGATAAACTCTTTGGTGAGCTCAGGATGCCTTGCTGAACAAAAGTGGGGTTCAAGGAAGAGCC TTAATGGTTGA
AA sequence Show only first row Show all	>Lus10040079 pacid=23173520 polypeptide=Lus10040079 locus=Lus10040079.g ID=Lus10040079.BGIv1.0 annot-version=v1.0 MSMDPNLASALVLLLSLFLAAVSSEYVRPPPRKTLEFPWSKKDSSHPQQVHISLAGEKHIRISWVTDDKSAPSTVKYGTSSGKYDATSHGESTSYTYLFY SSGKIHHTVIGPLQPNTLYFYRCGGQGIEYQLKTPPDRFPMTFAVAGDLGQTGWTQSTLAHIDQCKYDVHLLPGDLSYADYMQHRWDTFGQLVEPLASSR PWMVTQGNHEKENIPLLVDGFESYNSRWKMPYEESGSSSNLYYSFEIAGAHIIMLGSYTDYDKYSDQYNWLKADLAKVDREKTPWLLVLFHVPWYNSNSA HQGEGDDMKAVMEPLLYDAKVDMVLAGHVHAYERTERVYNGNSDPCGPVYITIGDGGNKEGLATKYMDPHPKWSAFREASFGHGEFQISNSTHAFWSWHR NDDDEPVRSDSIWINSLVSSGCLAEQKWGSRKSLNG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G20500		ATPAP18, PAP18	purple acid phosphatase 18 (.1...		Lus10040079 [exp]	0	1
AT3G50930		BCS1	cytochrome BC1 synthesis (.1)		Lus10041918 [exp]	3.2	0.7957
AT5G20650		COPT5	copper transporter 5 (.1)		Lus10012501 [exp]	3.9	0.8047
AT5G16550			unknown protein		Lus10003850 [exp]	5.7	0.7890
AT3G05200		ATL6	RING/U-box superfamily protein...		Lus10015167 [exp]	9.7	0.7822
AT5G48380		BIR1	BAK1-interacting receptor-like...		Lus10002147 [exp]	10.2	0.7738
AT1G24625	C2H2ZnF	ZFP7	zinc finger protein 7 (.1)		Lus10010388 [exp]	10.7	0.7432
AT5G58730			pfkB-like carbohydrate kinase ...		Lus10040669 [exp]	16.4	0.7880
AT2G24940		ATMAPR2	membrane-associated progestero...		Lus10002241 [exp]	18.0	0.7631
AT3G27890		NQR	NADPH:quinone oxidoreductase (...		Lus10039506 [exp]	19.7	0.7584
AT1G15760			Sterile alpha motif (SAM) doma...		Lus10041687 [exp]	21.5	0.7528

Compare expression of checked genes

Lus10040079 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.