Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G54890 481 / 6e-171 RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.1) AT4G31010 326 / 3e-109 RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.1), RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.2) AT2G20020 267 / 4e-83 CAF1, ATCAF1 RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.1) AT1G23400 248 / 5e-77 CAF2, ATCAF2 ARABIDOPSIS THALIANA HOMOLOG OF MAIZE CAF2, RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.1) AT3G01370 62 / 3e-10 ATCFM2 Arabidopsis thaliana CRM family member 2, CRM family member 2 (.1) AT3G23070 58 / 5e-09 ATCFM3A CRM family member 3A (.1) AT3G18390 58 / 8e-09 EMB1865 embryo defective 1865, CRS1 / YhbY (CRM) domain-containing protein (.1) AT4G29750 52 / 4e-07 CRS1 / YhbY (CRM) domain-containing protein (.1) AT4G14510 51 / 1e-06 ATCFM3B CRM family member 3B (.1) AT3G27550 44 / 0.0001 RNA-binding CRS1 / YhbY (CRM) domain protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019623 [exp] 390 / 4e-137 AT5G54890 318 / 4e-109 RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.1) Lus10041383 [exp] 315 / 6e-105 AT4G31010 526 / 0.0 RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.1), RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.2) Lus10036545 [exp] 291 / 4e-96 AT4G31010 446 / 8e-157 RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.1), RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.2) Lus10012974 [exp] 267 / 1e-83 AT2G20020 544 / 0.0 RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.1) Lus10043237 [exp] 260 / 5e-81 AT2G20020 605 / 0.0 RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.1) Lus10011119 [exp] 259 / 1e-80 AT2G20020 598 / 0.0 RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.1) Lus10029134 [exp] 249 / 1e-77 AT1G23400 712 / 0.0 ARABIDOPSIS THALIANA HOMOLOG OF MAIZE CAF2, RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.1) Lus10013029 [exp] 241 / 6e-73 AT1G23400 658 / 0.0 ARABIDOPSIS THALIANA HOMOLOG OF MAIZE CAF2, RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.1) Lus10034952 [exp] 159 / 9e-45 AT2G20020 274 / 2e-85 RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G423800 [exp] 525 / 0 AT5G54890 514 / 0.0 RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.1) Potri.014G074400 [exp] 338 / 4e-114 AT4G31010 501 / 1e-177 RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.1), RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.2) Potri.006G163100 [exp] 271 / 3e-84 AT2G20020 644 / 0.0 RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.1) Potri.010G042500 [exp] 247 / 1e-76 AT1G23400 655 / 0.0 ARABIDOPSIS THALIANA HOMOLOG OF MAIZE CAF2, RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.1) Potri.010G077100 [exp] 64 / 9e-11 AT3G23070 927 / 0.0 CRM family member 3A (.1) Potri.001G350801 [exp] 62 / 3e-10 AT3G01370 972 / 0.0 Arabidopsis thaliana CRM family member 2, CRM family member 2 (.1) Potri.012G056100 [exp] 62 / 4e-10 AT3G18390 935 / 0.0 embryo defective 1865, CRS1 / YhbY (CRM) domain-containing protein (.1) Potri.017G116700 [exp] 45 / 6e-05 AT5G16180 638 / 0.0 ARABIDOPSIS ORTHOLOG OF MAIZE CHLOROPLAST SPLICING FACTOR CRS1, ortholog of maize chloroplast splicing factor CRS1 (.1) Potri.001G343700 [exp] 44 / 0.0001 AT3G27550 465 / 1e-158 RNA-binding CRS1 / YhbY (CRM) domain protein (.1) Potri.014G176900 [exp] 42 / 0.0006 AT3G25440 411 / 9e-141 LAG One Homologue 1, RNA-binding CRS1 / YhbY (CRM) domain protein (.1), RNA-binding CRS1 / YhbY (CRM) domain protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01985 [flax] [poplar] CRS1_YhbY CRS1 / YhbY (CRM) domain
Representative CDS sequence Show only first row Show all	>Lus10040080 pacid=23173436 polypeptide=Lus10040080 locus=Lus10040080.g ID=Lus10040080.BGIv1.0 annot-version=v1.0 ATGCTACGGAAGTTGCTTTGTTTCCCAGACAGAGTTGCCAAAATCACCAGCAACCACTCTCCTTGCTTCATCTACATCTCTAATCTCTCTGCACACTCCC AATCCGAATTTCAATATGACCCGCCCTTCTCCCTCATCTCCAAACCCATACACTCACCAAGACCTAAACCTAAACCTAAACCTAAACCTAAATCTAAACA GACGCAACCCAAGCCGAATACCAGTCCTACTGATCCGGGCCCCAAGCTTCCTGTAAAATCCGACCTCCCTTTCGACTTCAGATACTCGTATTCCGAGCAC AATCCGGTGGTCCAACCAATTGGGTACCGGGAGAAGAAGAGGTTCTCGCCCTTTGGACCTAGCCGGCTTGATAGGGAATGGACAGGTACTGCAGCTCCTG CCGAGTCGGTGCTTGTGGATCAGGAAAAGGCGGTGGAAGAAAGGAATCGGGTCATCGGGGACCCGCTTACCGCCGAGGAGGTGGATGAGCTCGTTGAGCG GTATCGACACAGCGATTGTTCCCGGCAGATCAATCTGGGGAAAGGAGGAGTGACTCATAATATGTTGGATGATATCCACAACCATTGGAAACGAGCTGAA GCCGTCAGAATCAAGTGCTTGGGAGTTCCAACTCTCGATATGGACAATGTCTGCTTCCACCTTGAGGACAAATCTGGTGGGAAGATTATATACCGGCACA TCAACGTCCTTGTTTTGTATCGGGGAAGAAACTATGATCCCAAGAACCGGCCTCTTATTCCCTTGATGCTTTGGAAGCCTTATCCCCCTATTTATCCAAG GCTTATCAAGAATGTTGCTGATGGCTTAACATTTGAAGAAACCAAGGCAATGAGGAACAGAGGACTCAATTCTCTTCCGCTCATGAAGCTTACCAGAAAT GGTGTGTATGTGAATGTAGTGGATAAGGTGAGTGAGGCTTTCACTACCGAAGAGGTTGTGAGACTTGATTGCACTCATGTCGGTACCAGTGACTGCAAAA GGATTGGTGTGAAGCTAAGGGATTTAGTGCCTTGTGTTCCTATTTTGGTTAAGGAAGAGCAGGTTATACTTTGGAGGGGGTGGATTGACAAGGGACAGCA GCATGATTCTTCAACTATTCCAGCAGCAGACCCTTCCTCAGATGATTAG
AA sequence Show only first row Show all	>Lus10040080 pacid=23173436 polypeptide=Lus10040080 locus=Lus10040080.g ID=Lus10040080.BGIv1.0 annot-version=v1.0 MLRKLLCFPDRVAKITSNHSPCFIYISNLSAHSQSEFQYDPPFSLISKPIHSPRPKPKPKPKPKSKQTQPKPNTSPTDPGPKLPVKSDLPFDFRYSYSEH NPVVQPIGYREKKRFSPFGPSRLDREWTGTAAPAESVLVDQEKAVEERNRVIGDPLTAEEVDELVERYRHSDCSRQINLGKGGVTHNMLDDIHNHWKRAE AVRIKCLGVPTLDMDNVCFHLEDKSGGKIIYRHINVLVLYRGRNYDPKNRPLIPLMLWKPYPPIYPRLIKNVADGLTFEETKAMRNRGLNSLPLMKLTRN GVYVNVVDKVSEAFTTEEVVRLDCTHVGTSDCKRIGVKLRDLVPCVPILVKEEQVILWRGWIDKGQQHDSSTIPAADPSSDD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G54890			RNA-binding CRS1 / YhbY (CRM) ...		Lus10040080 [exp]	0	1
AT3G07740		HXA2, HXA02, HA...	homolog of yeast ADA2 2A (.1.2...		Lus10017553 [exp]	2.6	0.9279
AT3G51270			protein serine/threonine kinas...		Lus10013682 [exp]	2.8	0.9236
AT5G12230		MED19A	unknown protein		Lus10002150 [exp]	4.2	0.9233
AT3G52640			Zn-dependent exopeptidases sup...		Lus10007387 [exp]	4.9	0.9145
AT3G15150		HPY2, ATMMS21	HIGH PLOIDY2, A. THALIANA METH...		Lus10015968 [exp]	5.5	0.9103
AT1G53530			Peptidase S24/S26A/S26B/S26C f...		Lus10025393 [exp]	6.0	0.8987
AT4G31460			Ribosomal L28 family (.1)		Lus10013249 [exp]	6.3	0.9069
AT5G14250		CSN3, FUS11, CO...	FUSCA 11, COP9 SIGNALOSOME SUB...		Lus10022337 [exp]	7.4	0.9032
AT1G49180			protein kinase family protein ...		Lus10033518 [exp]	7.9	0.9066
AT1G23890			NHL domain-containing protein ...		Lus10030639 [exp]	10.0	0.8974

Compare expression of checked genes

Lus10040080 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.