Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G32540 186 / 4e-60 LOL1 lsd one like 1 (.1.2.3) AT4G20380 119 / 2e-33 LSD1 LESION SIMULATING DISEASE, LSD1 zinc finger family protein (.1.2.3.4.5.6.7.8) AT4G21610 99 / 8e-26 LOL2 lsd one like 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030969 [exp] 197 / 2e-64 AT1G32540 236 / 5e-81 lsd one like 1 (.1.2.3) Lus10035361 [exp] 194 / 4e-63 AT1G32540 233 / 5e-80 lsd one like 1 (.1.2.3) Lus10008066 [exp] 147 / 2e-43 AT4G20380 212 / 6e-70 LESION SIMULATING DISEASE, LSD1 zinc finger family protein (.1.2.3.4.5.6.7.8) Lus10023392 [exp] 143 / 8e-43 AT4G20380 210 / 6e-70 LESION SIMULATING DISEASE, LSD1 zinc finger family protein (.1.2.3.4.5.6.7.8) Lus10038409 [exp] 146 / 4e-42 AT1G32540 179 / 2e-55 lsd one like 1 (.1.2.3) Lus10000782 [exp] 118 / 1e-33 AT4G20380 160 / 4e-51 LESION SIMULATING DISEASE, LSD1 zinc finger family protein (.1.2.3.4.5.6.7.8) Lus10020766 [exp] 92 / 7e-23 AT4G21610 133 / 3e-40 lsd one like 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G090300 [exp] 191 / 6e-62 AT1G32540 194 / 1e-64 lsd one like 1 (.1.2.3) Potri.001G143900 [exp] 187 / 1e-60 AT1G32540 189 / 9e-63 lsd one like 1 (.1.2.3) Potri.011G154800 [exp] 130 / 5e-38 AT4G20380 205 / 5e-68 LESION SIMULATING DISEASE, LSD1 zinc finger family protein (.1.2.3.4.5.6.7.8) Potri.001G442400 [exp] 127 / 2e-36 AT4G20380 195 / 3e-64 LESION SIMULATING DISEASE, LSD1 zinc finger family protein (.1.2.3.4.5.6.7.8) Potri.004G043100 [exp] 91 / 8e-23 AT4G21610 131 / 7e-40 lsd one like 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06943 [flax] [poplar] zf-LSD1 LSD1 zinc finger
Representative CDS sequence Show only first row Show all	>Lus10040081 pacid=23173979 polypeptide=Lus10040081 locus=Lus10040081.g ID=Lus10040081.BGIv1.0 annot-version=v1.0 ATGCCAGTTCCACTTGCACCTTATCCTACACCACCAGCTCCATATACTCCTCCACCTCCTCCACCAGCTGCCAATGGTGGACAAAGCCAGTTAGTGTGTT CTGGATGTAGAAATCTGTTGCTTTTCCCAGTTGGGGCAACCTCAGTTTGCTGTGCTGTTTGCAATGCTGTCACAGCAGTCCCACCTCCTGGCACAGAGAT GGCTCAGCTGGTTTGTGGAGGCTGCCACACTTTGCTCATGTACATTCGTGGCGCCACTAGCGTGCAATGTTCGTGCTGCCACACTATCAATTTAGCATTA GAAGCAAACCAAGTAGCACATGTGAATTGTGGCAACTGCAGGATGCTGCTGATGTACGAGTATGGAGCTCGGTCTGTCAAATGCGCGGTCTGCAATTTCG TGACCTCTGTTGGGATGCTTGACAAAAACAAGTGTTTCAATTTCTTGCAAGTCACATCTCAACTCACTCACATGGTGTGGCCCCGAAGAGATATTTCAGA AGCAGGGTCTTTGCCCTTTGGCAAGGAAGAAAGGAACTTTGAGGAGAACAAATTACAAGAAAAAGTCTCCGAGAATGTCGGAGGTGACTCCGTGCCCAAG GGGCGAACTCGAGCAGACGCAACTCCTGCTGTCCAGTTTCACCGTCGACCAACCTCCTCCCCAGATCGACCCGATCGTCTAGAGGAAATGCAGTGGATCT CTGGCTGGAGTGGATGCTGA
AA sequence Show only first row Show all	>Lus10040081 pacid=23173979 polypeptide=Lus10040081 locus=Lus10040081.g ID=Lus10040081.BGIv1.0 annot-version=v1.0 MPVPLAPYPTPPAPYTPPPPPPAANGGQSQLVCSGCRNLLLFPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTINLAL EANQVAHVNCGNCRMLLMYEYGARSVKCAVCNFVTSVGMLDKNKCFNFLQVTSQLTHMVWPRRDISEAGSLPFGKEERNFEENKLQEKVSENVGGDSVPK GRTRADATPAVQFHRRPTSSPDRPDRLEEMQWISGWSGC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G32540		LOL1	lsd one like 1 (.1.2.3)		Lus10040081 [exp]	0	1
AT1G64150			Uncharacterized protein family...		Lus10032330 [exp]	2.0	0.9229
AT1G32540		LOL1	lsd one like 1 (.1.2.3)		Lus10035361 [exp]	4.6	0.9056
AT4G33520		AtHMAC6, HMA6, ...	Arabidopsis thaliana heavy met...		Lus10036161 [exp]	4.7	0.8817
AT1G64355			unknown protein		Lus10001903 [exp]	5.7	0.9007
AT1G07700			Thioredoxin superfamily protei...		Lus10024726 [exp]	8.7	0.9076
AT1G64150			Uncharacterized protein family...		Lus10024713 [exp]	16.6	0.8988
AT4G27700			Rhodanese/Cell cycle control p...		Lus10008866 [exp]	17.8	0.8985
AT5G47650		ATNUDX2, ATNUDT...	ARABIDOPSIS THALIANA NUDIX HYD...		Lus10038780 [exp]	19.1	0.8201
AT2G21530	FHA		SMAD/FHA domain-containing pro...		Lus10008411 [exp]	24.7	0.8801
AT1G13820			alpha/beta-Hydrolases superfam...		Lus10036913 [exp]	25.5	0.8791

Compare expression of checked genes

Lus10040081 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.