Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G17810 83 / 2e-19 C2H2ZnF ZFP12 C2H2 and C2HC zinc fingers superfamily protein (.1) AT2G37740 84 / 4e-19 C2H2ZnF ATZFP10, ZFP10 zinc-finger protein 10 (.1) AT2G42410 79 / 1e-17 C2H2ZnF ATZFP11, ZFP11 zinc finger protein 11 (.1) AT3G23130 78 / 2e-17 C2H2ZnF FLO10, FON1, SUP SUPERMAN, FLORAL ORGAN NUMBER 1, FLORAL DEFECTIVE 10, C2H2 and C2HC zinc fingers superfamily protein (.1) AT5G06070 76 / 1e-16 C2H2ZnF RAB, RBE RABBIT EARS, C2H2 and C2HC zinc fingers superfamily protein (.1) AT3G09290 64 / 2e-12 C2H2ZnF TAC1 telomerase activator1 (.1) AT3G53820 56 / 7e-10 C2H2ZnF C2H2 and C2HC zinc fingers superfamily protein (.1) AT5G43540 54 / 5e-09 C2H2ZnF C2H2 and C2HC zinc fingers superfamily protein (.1) AT1G24625 50 / 3e-07 C2H2ZnF ZFP7 zinc finger protein 7 (.1) AT1G80730 49 / 5e-07 C2H2ZnF ATZFP1, ZFP1 ARABIDOPSIS THALIANA ZINC-FINGER PROTEIN 1, zinc-finger protein 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030967 [exp] 263 / 4e-89 AT4G17810 112 / 1e-30 C2H2 and C2HC zinc fingers superfamily protein (.1) Lus10010871 [exp] 85 / 2e-19 AT2G37740 103 / 9e-26 zinc-finger protein 10 (.1) Lus10024362 [exp] 84 / 3e-19 AT2G37740 105 / 4e-27 zinc-finger protein 10 (.1) Lus10004705 [exp] 82 / 8e-19 AT2G37740 100 / 1e-25 zinc-finger protein 10 (.1) Lus10021490 [exp] 83 / 1e-18 AT2G37740 103 / 1e-25 zinc-finger protein 10 (.1) Lus10022206 [exp] 81 / 3e-18 AT3G23130 100 / 1e-25 SUPERMAN, FLORAL ORGAN NUMBER 1, FLORAL DEFECTIVE 10, C2H2 and C2HC zinc fingers superfamily protein (.1) Lus10021215 [exp] 81 / 1e-17 AT3G23130 102 / 1e-25 SUPERMAN, FLORAL ORGAN NUMBER 1, FLORAL DEFECTIVE 10, C2H2 and C2HC zinc fingers superfamily protein (.1) Lus10000481 [exp] 77 / 5e-17 AT4G17810 100 / 8e-26 C2H2 and C2HC zinc fingers superfamily protein (.1) Lus10004578 [exp] 77 / 6e-17 AT4G17810 95 / 6e-24 C2H2 and C2HC zinc fingers superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G142900 [exp] 125 / 2e-35 AT4G17810 135 / 1e-39 C2H2 and C2HC zinc fingers superfamily protein (.1) Potri.003G091200 [exp] 122 / 5e-34 AT4G17810 140 / 2e-41 C2H2 and C2HC zinc fingers superfamily protein (.1) Potri.008G059000 [exp] 84 / 7e-19 AT5G06070 99 / 2e-24 RABBIT EARS, C2H2 and C2HC zinc fingers superfamily protein (.1) Potri.006G089600 [exp] 84 / 7e-19 AT2G37740 102 / 2e-25 zinc-finger protein 10 (.1) Potri.016G101400 [exp] 81 / 7e-18 AT2G37740 108 / 3e-27 zinc-finger protein 10 (.1) Potri.010G199800 [exp] 80 / 1e-17 AT5G06070 100 / 4e-25 RABBIT EARS, C2H2 and C2HC zinc fingers superfamily protein (.1) Potri.008G163900 [exp] 78 / 3e-17 AT3G23130 119 / 1e-33 SUPERMAN, FLORAL ORGAN NUMBER 1, FLORAL DEFECTIVE 10, C2H2 and C2HC zinc fingers superfamily protein (.1) Potri.002G041700 [exp] 72 / 2e-15 AT2G42410 105 / 3e-28 zinc finger protein 11 (.1) Potri.005G221400 [exp] 69 / 2e-14 AT2G42410 97 / 4e-25 zinc finger protein 11 (.1) Potri.016G101300 [exp] 67 / 8e-14 AT3G53820 92 / 2e-24 C2H2 and C2HC zinc fingers superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10040083 pacid=23174188 polypeptide=Lus10040083 locus=Lus10040083.g ID=Lus10040083.BGIv1.0 annot-version=v1.0 ATGGCTAGTGAACTTGGCTTCCTTGCTCTCACCCACCTCCAAAACAACAATGATCAAAACCAGAACCAAAACCAGAAACAACAAAATCGTCGCGGCCACC AGCAAGCTGCCCGACCTCAGTTGGGCAACAACAACGGTGGGGCTGCGAGCACGTGGGTATGGAACCCTAAACGAACCGAGGAGGCCGAAGGAGAAGAAGA GGAAGAGTCGTGGGAGGTGAGGGCGTTCGAGGAAGATGCGGGGAACGTTTGGCCGCCCAGGTCCTACACGTGCACCTTCTGCCGCCGTGAGTTCCGGTCC GCGCAAGCCCTGGGCGGCCATATGAACGTCCACCGCCGGGACCGCGCCAAGCTCCACCACCCTCTGCCCTTACCTCGTCCCGGTGTGCCATCATCCACGG CGGTGGCGTCATCCTCCGCCTCCTCCTCGTCAACTTACATAATCCCGACTCCCGAATACTCCTCCTCTGCAGGGGGTTTGTGCTTGCTGTACCAATTCCC AAACCCTAATAATCACGCTGTCGGAGGAGGAGGGACGTTCAACCCGCCGAACAAGATTGCGTGGGGAGCGGCCACCGGAGGAGGGAATTCTCCGTCAACT GTCCTCTCCATGACTCCTAATAATTCGCAGCCGTGTTATACGGGAAGGAAGGAGATGGAAAGGGAAGAAGAGGAGCTGGATTTGGAGCTGAGGCTATAG
AA sequence Show only first row Show all	>Lus10040083 pacid=23174188 polypeptide=Lus10040083 locus=Lus10040083.g ID=Lus10040083.BGIv1.0 annot-version=v1.0 MASELGFLALTHLQNNNDQNQNQNQKQQNRRGHQQAARPQLGNNNGGAASTWVWNPKRTEEAEGEEEEESWEVRAFEEDAGNVWPPRSYTCTFCRREFRS AQALGGHMNVHRRDRAKLHHPLPLPRPGVPSSTAVASSSASSSSTYIIPTPEYSSSAGGLCLLYQFPNPNNHAVGGGGTFNPPNKIAWGAATGGGNSPST VLSMTPNNSQPCYTGRKEMEREEEELDLELRL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G17810	C2H2ZnF	ZFP12	C2H2 and C2HC zinc fingers sup...		Lus10040083 [exp]	0	1
AT3G09870			SAUR-like auxin-responsive pro...		Lus10030263 [exp]	1.7	0.9693
AT1G72610		ATGER1, GLP1	A. THALIANA GERMIN-LIKE PROTEI...		Lus10002795 [exp]	4.5	0.9533
AT5G25620		YUC6	YUCCA6, Flavin-binding monooxy...		Lus10041729 [exp]	4.5	0.9330
AT1G14960			Polyketide cyclase/dehydrase a...		Lus10042489 [exp]	5.3	0.9626
AT1G17930			Aminotransferase-like, plant m...		Lus10027047 [exp]	6.0	0.9450
AT1G13570			F-box/RNI-like superfamily pro...		Lus10011048 [exp]	6.7	0.9477
AT1G14040			EXS (ERD1/XPR1/SYG1) family pr...		Lus10035467 [exp]	6.9	0.9308
AT2G02950		PKS1	phytochrome kinase substrate 1...		Lus10030480 [exp]	7.1	0.9547
AT5G39790			5'-AMP-activated protein kinas...		Lus10028512 [exp]	7.7	0.9270
AT5G67360		ARA12	Subtilase family protein (.1)		Lus10029575 [exp]	9.9	0.9346

Compare expression of checked genes

Lus10040083 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.