Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G52270 316 / 8e-109 Transcription initiation factor IIF, beta subunit (.1) AT1G75510 289 / 1e-98 Transcription initiation factor IIF, beta subunit (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030963 [exp] 446 / 9e-161 AT3G52270 303 / 1e-104 Transcription initiation factor IIF, beta subunit (.1) Lus10023502 [exp] 434 / 4e-154 AT3G52270 294 / 4e-99 Transcription initiation factor IIF, beta subunit (.1) Lus10040384 [exp] 348 / 1e-121 AT3G52270 226 / 9e-74 Transcription initiation factor IIF, beta subunit (.1) Lus10033190 [exp] 328 / 1e-113 AT1G75510 352 / 4e-123 Transcription initiation factor IIF, beta subunit (.1) Lus10010631 [exp] 327 / 5e-113 AT1G75510 350 / 2e-122 Transcription initiation factor IIF, beta subunit (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G219800 [exp] 353 / 2e-123 AT3G52270 295 / 1e-100 Transcription initiation factor IIF, beta subunit (.1) Potri.002G028900 [exp] 334 / 5e-116 AT1G75510 346 / 5e-121 Transcription initiation factor IIF, beta subunit (.1) Potri.005G233800 [exp] 331 / 4e-115 AT1G75510 354 / 3e-124 Transcription initiation factor IIF, beta subunit (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF02270 [flax] [poplar] TFIIF_beta TFIIF, beta subunit HTH domain
Representative CDS sequence Show only first row Show all	>Lus10040084 pacid=23174210 polypeptide=Lus10040084 locus=Lus10040084.g ID=Lus10040084.BGIv1.0 annot-version=v1.0 ATGGAAGAGGGCGCATCAGCGTCAGCGAAGCCCGCCATCAACAAAAACAACCGACCGGGCGGGATCACCATTGGAGGGTTTCTGGAGACCAGCAAAGCCG AGAGGTCGGTCTGGCTCATGAAATGCCCTTCTCTTGTTTCTCACTCCCTCCGCTCCCCTTTATCCGATGACCTTTCTTCTCCCGTCGCCAAAGTCATCGT CTCCGTCGACCCTCTTAACTCGAATGCCGATGATTCCTCTACCCAGTTCACGATGGAGTTGGCTGCGACTGAATCGGGGAATACACCAAAATCATACACT TTAGCAATGTCTAAGGACTTCGTTCCAATGTCTGTATTTGCTGAGACATCTCAAGGAAAGGTGTTTGTGGAGGGGAAGATACTGAACAAATTCGACGTGA AGCCCCATTCTGAGAATCTTGAAAAGTATGGAAAGCTATGTCGTGAGAGGACAAAGAAGTATATGACCAAGAACAGACAAGTCCAGGTGATTGATAATGC CAATGGAACTCACATGAGGCCTATGCCTGGGATGATGACAACTTCTTTCTCCACCGTGCACGAAAAGAAAAAACCGCCGGCCAAAGCATCTGATACGAAA AGGACGAGAAGGGATCGGGGAGAGATGGAAGACATTATGTTCAAGCTATTTGAAAGGCAACCTAATTGGACTTTAAAACAACTCATTCAGGAAACAGACC AGCCTGAACTGTTTCTGAAAGACATACTGAAGGAGCTTTGTGTGTACAACAACAAGGGCAGTAACCAAGGATCCTATGAGCTAAAGCCAGAATACAAGAA GTCAAGTGAGGATCCAGTAAAATCGTAA
AA sequence Show only first row Show all	>Lus10040084 pacid=23174210 polypeptide=Lus10040084 locus=Lus10040084.g ID=Lus10040084.BGIv1.0 annot-version=v1.0 MEEGASASAKPAINKNNRPGGITIGGFLETSKAERSVWLMKCPSLVSHSLRSPLSDDLSSPVAKVIVSVDPLNSNADDSSTQFTMELAATESGNTPKSYT LAMSKDFVPMSVFAETSQGKVFVEGKILNKFDVKPHSENLEKYGKLCRERTKKYMTKNRQVQVIDNANGTHMRPMPGMMTTSFSTVHEKKKPPAKASDTK RTRRDRGEMEDIMFKLFERQPNWTLKQLIQETDQPELFLKDILKELCVYNNKGSNQGSYELKPEYKKSSEDPVKS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G52270			Transcription initiation facto...		Lus10040084 [exp]	0	1
AT4G24470	GATA	GATA25, TIFY1, ...	Zinc-finger protein expressed ...		Lus10002412 [exp]	2.0	0.8849
AT5G14640		ATSK13	shaggy-like kinase 13 (.1)		Lus10013088 [exp]	4.6	0.8832
AT5G03670			unknown protein		Lus10035565 [exp]	11.0	0.8825
AT4G24710			P-loop containing nucleoside t...		Lus10043321 [exp]	11.0	0.8833
AT1G18720			Protein of unknown function (D...		Lus10021661 [exp]	11.3	0.8351
AT3G58570			P-loop containing nucleoside t...		Lus10001074 [exp]	16.9	0.8389
AT5G12080		ATMSL10, MSL10	mechanosensitive channel of sm...		Lus10011953 [exp]	18.9	0.8469
AT5G36740			Acyl-CoA N-acyltransferase wit...		Lus10022055 [exp]	19.8	0.8398
AT3G19590		BUB3.1	BUB \(BUDDING UNINHIBITED BY B...		Lus10023814 [exp]	20.1	0.8667
AT1G01110		IQD18	IQ-domain 18 (.1.2)		Lus10010104 [exp]	22.2	0.8734

Compare expression of checked genes

Lus10040084 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.