Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G46640 210 / 2e-64 AT-hook AT hook motif DNA-binding family protein (.1) AT4G17950 207 / 7e-63 AT-hook AT hook motif DNA-binding family protein (.1) AT2G33620 185 / 5e-55 AT-hook AT hook motif DNA-binding family protein (.1.2.3.4) AT4G12080 153 / 5e-43 AT-hook ATAHL1, AHL1 AT-hook motif nuclear-localized protein 1 (.1) AT4G25320 152 / 4e-42 AT-hook AT hook motif DNA-binding family protein (.1) AT1G63470 144 / 2e-39 AT-hook AT hook motif DNA-binding family protein (.1) AT4G22770 141 / 9e-39 AT-hook AT hook motif DNA-binding family protein (.1) AT3G61310 139 / 1e-37 AT-hook AT hook motif DNA-binding family protein (.1) AT4G00200 138 / 1e-37 AT-hook AT hook motif DNA-binding family protein (.1) AT2G45850 133 / 2e-35 AT-hook AT hook motif DNA-binding family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030962 [exp] 589 / 0 AT4G17950 235 / 2e-73 AT hook motif DNA-binding family protein (.1) Lus10011067 [exp] 353 / 1e-120 AT2G33620 225 / 4e-71 AT hook motif DNA-binding family protein (.1.2.3.4) Lus10000315 [exp] 353 / 2e-120 AT2G33620 228 / 4e-72 AT hook motif DNA-binding family protein (.1.2.3.4) Lus10037858 [exp] 160 / 1e-45 AT2G45850 278 / 1e-91 AT hook motif DNA-binding family protein (.1.2) Lus10030381 [exp] 159 / 2e-45 AT2G45850 284 / 3e-94 AT hook motif DNA-binding family protein (.1.2) Lus10004022 [exp] 150 / 7e-42 AT4G12080 288 / 1e-95 AT-hook motif nuclear-localized protein 1 (.1) Lus10030269 [exp] 150 / 1e-41 AT4G12080 294 / 7e-98 AT-hook motif nuclear-localized protein 1 (.1) Lus10008533 [exp] 147 / 9e-41 AT1G63470 292 / 7e-97 AT hook motif DNA-binding family protein (.1) Lus10008535 [exp] 146 / 4e-40 AT1G63470 296 / 3e-98 AT hook motif DNA-binding family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G143500 [exp] 312 / 4e-104 AT4G17950 243 / 9e-77 AT hook motif DNA-binding family protein (.1) Potri.003G090900 [exp] 307 / 3e-102 AT4G17950 216 / 3e-66 AT hook motif DNA-binding family protein (.1) Potri.002G005000 [exp] 189 / 2e-56 AT2G33620 228 / 8e-72 AT hook motif DNA-binding family protein (.1.2.3.4) Potri.002G158200 [exp] 176 / 4e-52 AT2G45850 219 / 4e-69 AT hook motif DNA-binding family protein (.1.2) Potri.014G082100 [exp] 175 / 2e-51 AT2G45850 229 / 8e-73 AT hook motif DNA-binding family protein (.1.2) Potri.005G256500 [exp] 172 / 1e-49 AT2G33620 196 / 2e-59 AT hook motif DNA-binding family protein (.1.2.3.4) Potri.012G129500 [exp] 165 / 1e-47 AT5G62260 202 / 2e-61 AT hook motif DNA-binding family protein (.1) Potri.001G115800 [exp] 163 / 5e-47 AT4G12080 248 / 2e-80 AT-hook motif nuclear-localized protein 1 (.1) Potri.002G148600 [exp] 160 / 8e-46 AT4G12080 248 / 2e-80 AT-hook motif nuclear-localized protein 1 (.1) Potri.001G104900 [exp] 159 / 3e-45 AT1G63470 281 / 1e-92 AT hook motif DNA-binding family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0615 [flax] [poplar] ALDC PF03479 [flax] [poplar] PCC Plants and Prokaryotes Conserved (PCC) domain
Representative CDS sequence Show only first row Show all	>Lus10040085 pacid=23174059 polypeptide=Lus10040085 locus=Lus10040085.g ID=Lus10040085.BGIv1.0 annot-version=v1.0 ATGGACTCCAAACCACCGCAGCACATGCTGCATCCCTCGCATCATCATGATCTCAACCACCACCACCACAATCACCACCAGCTGAACAACAACCACCACC ACCACCACCACCAGCAAGCGCACGCACCAAACATGATGCTAGGTCCCGTTCATCTCTACCCTACGATGATCAACCCGAACGTCCCTTCCGGTGGCGGAGC CGGCGGATTCCAGTTCAATTCTATTCCCATACGCCCCCAATCGAAGCCCCCTACTACATCTGACGTGGGGGGGATGAACCCCGGCTCGTTCGACGGATCG TCGCCTACCTCTTCAGGAATGAGGTTTAGCATCGAGCCTGTTAAGAAGAAGCGCGGGAGGCCAAGGAAGTATGCTCCCGAAGGCAACATTGCTCTCGGCT TGTCGCCCACCACCCCGATTTCTTCTTCGGTAGGTCAGGGGGAGACCGGTGCTCCTGCTTCTTTGTCGTCGTCGGACAATACTGCTAAGAAGCATAGAGG GAGGCCGCCGGGTTCTGTCAAGAGGCAGCTTGATGCCTTAGGAGGAGTTGGAGGAGTGGGATTTACGCCTCATGTAATCTTCGTGAAAACTGGCGAGGAT ATTGCATCGAAGATTTATACTTTTTCGCAGCAGGGTCCAAGAACTGTATGTATTCTCTCAGGAAATGGGGCCATATCCAATGTTACCCTCCGCCAACCTG CTTCTGGTGGCACAGTGACATACGAGGGGAATTATGAAATAATTTCATTAACAGGCTCTGTGTGGCTTTCTGAAAATGATGGTAATAGAAGTAGAAATGG TGGTTTGAGTGTTTCTCTGGCCGGAATAGATGGCCGAGTTTTGGGTGGTGGAGTGGCTGGAATATTGGTGGCAGCGTCACCAGTCCAGGTTATCGTGGGC AGCTTTGTTGCTGAGGGAAGAAAGCCGACTCCAGAGGAATCAGCATCCGGACCGTCATTGCCACCTGCAACCCACATGTTGAATTTTGGTGCACCAATGT CAGCACCTAGTCTTCCTTTCCAAGCGCCTTCGAGCGAATCTTCGGACGACCATGGTAGTAGTCCCTTAAACAACAAGGGAGCTGGAATGTATGGCAATGC CGATCAAGAGCCCCTCCACAGTATGCAAATGTACCATGTACTGGCTGGCCAAGACCCTCAATGA
AA sequence Show only first row Show all	>Lus10040085 pacid=23174059 polypeptide=Lus10040085 locus=Lus10040085.g ID=Lus10040085.BGIv1.0 annot-version=v1.0 MDSKPPQHMLHPSHHHDLNHHHHNHHQLNNNHHHHHHQQAHAPNMMLGPVHLYPTMINPNVPSGGGAGGFQFNSIPIRPQSKPPTTSDVGGMNPGSFDGS SPTSSGMRFSIEPVKKKRGRPRKYAPEGNIALGLSPTTPISSSVGQGETGAPASLSSSDNTAKKHRGRPPGSVKRQLDALGGVGGVGFTPHVIFVKTGED IASKIYTFSQQGPRTVCILSGNGAISNVTLRQPASGGTVTYEGNYEIISLTGSVWLSENDGNRSRNGGLSVSLAGIDGRVLGGGVAGILVAASPVQVIVG SFVAEGRKPTPEESASGPSLPPATHMLNFGAPMSAPSLPFQAPSSESSDDHGSSPLNNKGAGMYGNADQEPLHSMQMYHVLAGQDPQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G17950	AT-hook		AT hook motif DNA-binding fami...		Lus10040085 [exp]	0	1
AT5G19160		TBL11	TRICHOME BIREFRINGENCE-LIKE 11...		Lus10034041 [exp]	1.4	0.8640
AT1G31320	AS2	LBD4	LOB domain-containing protein ...		Lus10040638 [exp]	2.4	0.8479
AT5G47530			Auxin-responsive family protei...		Lus10001734 [exp]	4.6	0.8161
AT2G42520			P-loop containing nucleoside t...		Lus10000849 [exp]	4.6	0.8560
AT5G42560			Abscisic acid-responsive (TB2/...		Lus10033152 [exp]	4.9	0.8446
AT1G12430		AtKINUa, ARK3, ...	phosphatidic acid kinase, Arab...		Lus10007014 [exp]	6.8	0.8619
AT1G49890		QWRF2	QWRF domain containing 2, Fami...		Lus10014636 [exp]	7.5	0.8540
AT5G42560			Abscisic acid-responsive (TB2/...		Lus10034519 [exp]	8.8	0.8452
AT5G03340			ATPase, AAA-type, CDC48 protei...		Lus10016123 [exp]	12.4	0.8300
AT5G17770		CBR1, ATCBR	NADH:cytochrome B5 reductase 1...		Lus10008407 [exp]	14.0	0.8270

Compare expression of checked genes

Lus10040085 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.