Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G46630 814 / 0 Clathrin adaptor complexes medium subunit family protein (.1.2) AT1G60780 345 / 2e-115 HAP13 HAPLESS 13, Clathrin adaptor complexes medium subunit family protein (.1) AT1G10730 337 / 2e-112 Clathrin adaptor complexes medium subunit family protein (.1) AT4G24550 253 / 2e-79 Clathrin adaptor complexes medium subunit family protein (.1.2.3) AT1G56590 149 / 3e-40 ZIP4 ZIG SUPPRESSOR 4, Clathrin adaptor complexes medium subunit family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030961 [exp] 843 / 0 AT5G46630 837 / 0.0 Clathrin adaptor complexes medium subunit family protein (.1.2) Lus10004626 [exp] 345 / 1e-115 AT1G60780 827 / 0.0 HAPLESS 13, Clathrin adaptor complexes medium subunit family protein (.1) Lus10026688 [exp] 337 / 4e-112 AT1G60780 813 / 0.0 HAPLESS 13, Clathrin adaptor complexes medium subunit family protein (.1) Lus10042083 [exp] 333 / 6e-111 AT1G60780 779 / 0.0 HAPLESS 13, Clathrin adaptor complexes medium subunit family protein (.1) Lus10018088 [exp] 311 / 2e-98 AT1G60780 632 / 0.0 HAPLESS 13, Clathrin adaptor complexes medium subunit family protein (.1) Lus10024548 [exp] 235 / 4e-72 AT4G24550 804 / 0.0 Clathrin adaptor complexes medium subunit family protein (.1.2.3) Lus10000107 [exp] 226 / 3e-70 AT1G60780 572 / 0.0 HAPLESS 13, Clathrin adaptor complexes medium subunit family protein (.1) Lus10003537 [exp] 224 / 8e-68 AT4G24550 785 / 0.0 Clathrin adaptor complexes medium subunit family protein (.1.2.3) Lus10031432 [exp] 156 / 7e-43 AT1G56590 705 / 0.0 ZIG SUPPRESSOR 4, Clathrin adaptor complexes medium subunit family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G090800 [exp] 833 / 0 AT5G46630 831 / 0.0 Clathrin adaptor complexes medium subunit family protein (.1.2) Potri.001G143800 [exp] 826 / 0 AT5G46630 816 / 0.0 Clathrin adaptor complexes medium subunit family protein (.1.2) Potri.010G044700 [exp] 345 / 9e-116 AT1G60780 834 / 0.0 HAPLESS 13, Clathrin adaptor complexes medium subunit family protein (.1) Potri.008G187600 [exp] 344 / 2e-115 AT1G60780 831 / 0.0 HAPLESS 13, Clathrin adaptor complexes medium subunit family protein (.1) Potri.002G105100 [exp] 241 / 8e-75 AT4G24550 817 / 0.0 Clathrin adaptor complexes medium subunit family protein (.1.2.3) Potri.005G010600 [exp] 147 / 1e-39 AT1G56590 716 / 0.0 ZIG SUPPRESSOR 4, Clathrin adaptor complexes medium subunit family protein (.1) Potri.013G006400 [exp] 142 / 7e-38 AT1G56590 712 / 0.0 ZIG SUPPRESSOR 4, Clathrin adaptor complexes medium subunit family protein (.1) Potri.002G105050 [exp] 98 / 6e-24 AT4G24550 299 / 9e-102 Clathrin adaptor complexes medium subunit family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0448 [flax] [poplar] Cargo_bd_muHD PF00928 [flax] [poplar] Adap_comp_sub Adaptor complexes medium subunit family
Representative CDS sequence Show only first row Show all	>Lus10040086 pacid=23173925 polypeptide=Lus10040086 locus=Lus10040086.g ID=Lus10040086.BGIv1.0 annot-version=v1.0 ATGCCGGTAGCTGCTTCAGCTCTCTATTTCTTGAACCTCCGCGGCGATGTCCTCATCAATCGTCTCTACCGCGACGATGTTGGGGGAAATATGGTTGATG CGTTCCGGATGCATATTATGCAGACGAAGGAACTTGGGACATGCCCTGTGCGTCAAATTGGAGGCTGTTCATTCTTTTATATGAGGATCAGCAACGTCTA CATTGTGGTTGTAGTGAGCAGCAATGCTAATGTTGCTTGTGCATTCAAATTTGTGGTAGAGGCTGTTGCACTATTCAAGTCATACTTCGGTGGTGCATTT GATGAAGATGCTATCAGAAATAATTTTGTTTTGATATACGAGTTGCTTGATGAGATCATGGACTTTGGATATCCACAGAATTTGTCTCCTGAGATATTAA AGCTATACATTACTCAAGAAGGAGTGCGGTCACCATTTTCATCCAAGCAAGCTTTGGATAAGCCTGTACCAAATGCCACATTGCAAGTTACAGGGGCTGT TGGTTGGCGAAGGGAAGGACTCGTATACAAAAAGAACGAGGTTTTCTTGGATATTGTGGAAAGCGTTAATCTTCTTATGTCCTCCAAAGGTAGTGTACTA CGTTGTGATGTAACTGGGAAGATTCTGATGAAGTGCTTCCTCTCCGGAATGCCTGATTTGAAATTGGGTTTAAACGATAAAATTGGCCTTGAGAAAGAGT CACAACTCAAGAACCGTCCCACTAAAAGTGGTAAAACAATTGAGCTTGATGATGTTACTTTCCATCAATGCGTGAACTTAACAAGGTTCAACTCGGAGAA GACAGTTAGTTTTGTTCCACCTGATGGTGAATTTGAATTGATGAAGTACCGCATCACAGAGGGGGTTAATCTACCATTCAGGGTATTACCAACCATTAAG GAACATGGCCGAACACGTATGGAAGTGAATGTCAAGGTTAAGAGCGTTTTTGGGGCGAAAATGTTTGCTCTTGGTGTGGTAATCAAAATCCCTGTACCAA AACAAACAGCTAAAACAAGCTTCCAAGTGACGTCAGGACGGGCAAAGTACAATGCGTCAATTGATTGCTTGGTCTGGAAGATAAAGAAGTTTCCAGGTCA GACTGAGCCAACCTTGAGTGCAGAAGTTGAGTTGATTTCTACAATTGCAGATAAGAAGTCTTGGACACGACCGCCAATTCAAATGGAGTTCCAGGTCCCC ATGTTTACAGCATCTGGATTGCGTGTCAGATTTCTTAAGGTGTGGGAGAAGAGTGGTTACAACACTGTCGAGTGGGTTCGCTACATTACAAAAGCAGGAT CTTACGAGATTAGGTGCTAG
AA sequence Show only first row Show all	>Lus10040086 pacid=23173925 polypeptide=Lus10040086 locus=Lus10040086.g ID=Lus10040086.BGIv1.0 annot-version=v1.0 MPVAASALYFLNLRGDVLINRLYRDDVGGNMVDAFRMHIMQTKELGTCPVRQIGGCSFFYMRISNVYIVVVVSSNANVACAFKFVVEAVALFKSYFGGAF DEDAIRNNFVLIYELLDEIMDFGYPQNLSPEILKLYITQEGVRSPFSSKQALDKPVPNATLQVTGAVGWRREGLVYKKNEVFLDIVESVNLLMSSKGSVL RCDVTGKILMKCFLSGMPDLKLGLNDKIGLEKESQLKNRPTKSGKTIELDDVTFHQCVNLTRFNSEKTVSFVPPDGEFELMKYRITEGVNLPFRVLPTIK EHGRTRMEVNVKVKSVFGAKMFALGVVIKIPVPKQTAKTSFQVTSGRAKYNASIDCLVWKIKKFPGQTEPTLSAEVELISTIADKKSWTRPPIQMEFQVP MFTASGLRVRFLKVWEKSGYNTVEWVRYITKAGSYEIRC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G46630			Clathrin adaptor complexes med...		Lus10040086 [exp]	0	1
AT4G29810		MK1, ATMKK2	MAP KINASE KINASE 1, MAP kinas...		Lus10027623 [exp]	1.4	0.8398
AT4G34660			SH3 domain-containing protein ...		Lus10017501 [exp]	1.7	0.8361
AT5G03540		ATEXO70A1	exocyst subunit exo70 family p...		Lus10034151 [exp]	2.2	0.8412
AT4G34260		AXY8, FUC95A	ALTERED XYLOGLUCAN 8, 1,2-alph...		Lus10029689 [exp]	2.4	0.8199
AT3G46440		UXS5	UDP-XYL synthase 5 (.1.2)		Lus10005450 [exp]	2.8	0.8349
AT2G21270		UFD1	ubiquitin fusion degradation 1...		Lus10042053 [exp]	3.7	0.7959
AT2G38020		EMB258, MAN, VC...	VACUOLELESS 1, MANGLED, vacuol...		Lus10012203 [exp]	5.9	0.8166
AT5G60710			Zinc finger (C3HC4-type RING f...		Lus10016102 [exp]	7.1	0.7397
AT2G17200		DSK2	ubiquitin family protein (.1)		Lus10023934 [exp]	7.7	0.8019
AT1G78300		14-3-3OMEGA, GF...	14-3-3 PROTEIN G-BOX FACTOR14 ...		Lus10010349 [exp]	8.9	0.7895

Compare expression of checked genes

Lus10040086 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.