Plant FIBer expression Database

Lus10040087 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G17960 127 / 4e-38 unknown protein
AT5G46620 109 / 5e-31 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10030960
[exp]
248 / 4e-85 AT4G17960 144 / 2e-44 unknown protein
Lus10000314
[exp]
91 / 4e-24 AT4G17960 74 / 2e-18 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G143600
[exp]
148 / 6e-46 AT4G17960 164 / 1e-52 unknown protein
Potri.003G090600
[exp]
144 / 2e-44 AT4G17960 151 / 2e-47 unknown protein
PFAM info
Representative CDS sequence
>Lus10040087 pacid=23173839 polypeptide=Lus10040087 locus=Lus10040087.g ID=Lus10040087.BGIv1.0 annot-version=v1.0
ATGCGACTCTTTAGAAGATTAGCCGGCATCCTCGGATTAGTTAGAGACGAAGGCGAACACGATGTGAAACATCATCACGAAGAAGAAGAAGAAGAAGAAG
AAGGACAAGGAGACGAAGCAGAGCAATACATTCCTCAATCGCGTTCTACATCTGGTTTCCATCAAACTGGCTTACCACGTAAAGGCTTCAGTGTCCCTGT
CCAGGTCCCCGTCGATCGCCAACACCCTGGTCCTATTCTCTTGCCCTGCAAGTCTGGGGATGGCGGCGTCCAGGGTCTAAAGTGGTACGCAAAGAGTCTC
AAGATAGACGAAGACGGAGACGTGGCAGATGAATTCCTCGACGAGACTTTGTCCTCCAACCCAGGTGAGCAACGCATGCCATCACTGCCAAGATTTGAAC
CGAAACTCAACGTCCGTCATGCCAAGGTTAAGAGGCAAGTAATGTGCAATGACGGGAAATTCCAACACTTGATCGAAGATCAAGGCAGAAGGCGACTTGT
ATGA
AA sequence
>Lus10040087 pacid=23173839 polypeptide=Lus10040087 locus=Lus10040087.g ID=Lus10040087.BGIv1.0 annot-version=v1.0
MRLFRRLAGILGLVRDEGEHDVKHHHEEEEEEEEGQGDEAEQYIPQSRSTSGFHQTGLPRKGFSVPVQVPVDRQHPGPILLPCKSGDGGVQGLKWYAKSL
KIDEDGDVADEFLDETLSSNPGEQRMPSLPRFEPKLNVRHAKVKRQVMCNDGKFQHLIEDQGRRRLV

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT4G17960 unknown protein Lus10040087
[exp]
0 1
AT4G19180 GDA1/CD39 nucleoside phosphata... Lus10037285
[exp]
3.5 0.8330
AT5G57140 ATPAP28, PAP28 purple acid phosphatase 28 (.1... Lus10022947
[exp]
5.5 0.8123
AT2G39290 PGP1, PGS1, PGP... phosphatidylglycerolphosphate ... Lus10030301
[exp]
9.6 0.8231
AT3G05030 ATNHX2, NHX2 sodium hydrogen exchanger 2 (.... Lus10001718
[exp]
15.9 0.7868
AT4G37820 unknown protein Lus10019253
[exp]
21.8 0.7826
AT2G35150 EXL7, EXL1 EXORDIUM LIKE 7, EXORDIUM like... Lus10018314
[exp]
25.1 0.7501
AT4G11090 TBL23 TRICHOME BIREFRINGENCE-LIKE 23... Lus10032367
[exp]
25.2 0.7916
AT1G22610 C2 calcium/lipid-binding plant... Lus10001538
[exp]
26.8 0.7718
AT1G80530 Major facilitator superfamily ... Lus10041962
[exp]
29.9 0.7975
AT1G22150 SULTR1;3 sulfate transporter 1;3 (.1) Lus10029616
[exp]
33.8 0.7688

Lus10040087 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.