Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G35260 311 / 4e-104 unknown protein AT4G17840 271 / 4e-88 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030958 [exp] 463 / 7e-164 AT2G35260 440 / 3e-154 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G143400 [exp] 332 / 3e-112 AT2G35260 421 / 1e-146 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10040089 pacid=23174175 polypeptide=Lus10040089 locus=Lus10040089.g ID=Lus10040089.BGIv1.0 annot-version=v1.0 ATGGCGATGCCGCTTGTTTCTCGTACTCCGACTCAAGCGACTACGGCGGCGGGGTCGTCGTCTACTTTCAGCGGCAGGGTTGTTGGCCGCGCGAGTTCGG TAGCGTTCACTGATTTCCCGACGACAAGGAGGAGGAAGAGGGGGTTGAACTTGAGAGGCTGTAGAAACAGGAATTCAATATGTCACGTGGTTAGAATTTC TGCGGAGAGGAGTAGCGAAGGGATAAACCCGACGGATAGCGCCGGCGGCAGTAGTGGCTCAGGGGTTGGTGGAGGTTTCACGGGAGGTGCGATGGAGGTT ACCACATTCGACCGGAGCTTCGGCGAAGCTGATCAGTTTCCTGTTTGGGAGAAGATTGGTGCCGTTGTTCGGCTGAGTTACGGTATCGGTATATATGGAG CTATGGGTTTAGCTGGAAAATTCATCTGCTCCTTCACTGGAATTGATAGCATGGGAGGATTCGATCCATCGTTGGATGCTATTCTTAATGGACTTGGATA TGCTGCACCTCCAATTATGGCTCTACTGTTCATATTAGATGATGAAGTAGTGAAGGTGTCTCCTCATGCTCGTGCCATCAGAGATGTGGAGGATGAGGAA CTTAGAAACTTCTTCTATGGAATGTCTCCATGGCAGTTTGTCTTAATTGTTGCTGCAAGTTCTGTGGGCGAGGAGCTTTTCTACCGTGCTGCAGTGCAGG GAGCTCTGGCTGATATGTTTTTAAAGAGCACAAGTATGGCTACAAATGCTCAAGGAATGGTGTCCTTGGCTGGTGTGTTGCCTCCGCTTGTTCCATTTGC ACAGGCTTTCGCAGCTGCAGTTACTGCTGCCCTTACCGGCTTCCTGTATTACGTCTCCTCCTCTCCTAAAGACCCTATCTATGTGGTTGCCCCAGTCTTG CCGTCTCGCTCTGGACGTGGGGATCTGAAACGGCTCTTTGCAGACGAACAACATTCTTGCACCAATGATTACCCACGGAATATATTCGACGGTGGTTTTG GGGCATGGTTTGTGGAAGATACACGACCACCGGAAACGACTCCGCCATAG
AA sequence Show only first row Show all	>Lus10040089 pacid=23174175 polypeptide=Lus10040089 locus=Lus10040089.g ID=Lus10040089.BGIv1.0 annot-version=v1.0 MAMPLVSRTPTQATTAAGSSSTFSGRVVGRASSVAFTDFPTTRRRKRGLNLRGCRNRNSICHVVRISAERSSEGINPTDSAGGSSGSGVGGGFTGGAMEV TTFDRSFGEADQFPVWEKIGAVVRLSYGIGIYGAMGLAGKFICSFTGIDSMGGFDPSLDAILNGLGYAAPPIMALLFILDDEVVKVSPHARAIRDVEDEE LRNFFYGMSPWQFVLIVAASSVGEELFYRAAVQGALADMFLKSTSMATNAQGMVSLAGVLPPLVPFAQAFAAAVTAALTGFLYYVSSSPKDPIYVVAPVL PSRSGRGDLKRLFADEQHSCTNDYPRNIFDGGFGAWFVEDTRPPETTPP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G35260			unknown protein		Lus10040089 [exp]	0	1
AT2G35260			unknown protein		Lus10030958 [exp]	1.0	0.9616
AT5G61410		RPE, EMB2728	EMBRYO DEFECTIVE 2728, D-ribul...		Lus10001653 [exp]	2.0	0.9316
AT5G35790		G6PD1	glucose-6-phosphate dehydrogen...		Lus10006386 [exp]	2.8	0.9156
AT3G59400		GUN4	GENOMES UNCOUPLED 4, enzyme bi...		Lus10018961 [exp]	5.7	0.9277
AT3G02830	C3HZnF	ZFN1	zinc finger protein 1 (.1)		Lus10020196 [exp]	6.5	0.8892
AT2G39730		RCA	rubisco activase (.1.2.3)		Lus10002710 [exp]	8.5	0.9056
AT3G53470			unknown protein		Lus10014016 [exp]	9.2	0.9143
AT3G01750			Ankyrin repeat family protein ...		Lus10036974 [exp]	11.5	0.8872
AT5G61410		RPE, EMB2728	EMBRYO DEFECTIVE 2728, D-ribul...		Lus10021627 [exp]	12.6	0.8968
AT1G07540	MYB	TRFL2	TRF-like 2 (.1)		Lus10024385 [exp]	13.7	0.8881

Compare expression of checked genes

Lus10040089 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.