Plant FIBer expression Database

Lus10040090 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G17830 738 / 0 Peptidase M20/M25/M40 family protein (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10030957
[exp]
892 / 0 AT4G17830 734 / 0.0 Peptidase M20/M25/M40 family protein (.1.2)
Lus10042502
[exp]
49 / 7e-06 AT1G44820 635 / 0.0 Peptidase M20/M25/M40 family protein (.1)
Lus10013848
[exp]
48 / 2e-05 AT4G38220 576 / 0.0 aquaporin interactor, Peptidase M20/M25/M40 family protein (.1.2)
Lus10026565
[exp]
44 / 0.0003 AT4G38220 616 / 0.0 aquaporin interactor, Peptidase M20/M25/M40 family protein (.1.2)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G143200
[exp]
763 / 0 AT4G17830 744 / 0.0 Peptidase M20/M25/M40 family protein (.1.2)
Potri.003G091100
[exp]
752 / 0 AT4G17830 734 / 0.0 Peptidase M20/M25/M40 family protein (.1.2)
Potri.002G085400
[exp]
46 / 4e-05 AT1G44820 660 / 0.0 Peptidase M20/M25/M40 family protein (.1)
Potri.002G085500
[exp]
44 / 0.0002 AT1G44820 636 / 0.0 Peptidase M20/M25/M40 family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF07687 M20_dimer Peptidase dimerisation domain
CL0035 Peptidase_MH PF01546 Peptidase_M20 Peptidase family M20/M25/M40
Representative CDS sequence
>Lus10040090 pacid=23174217 polypeptide=Lus10040090 locus=Lus10040090.g ID=Lus10040090.BGIv1.0 annot-version=v1.0
ATGGAGCAGTTAACCGACGGCATTGATGTGCATGGATCTGGAATTGGGAATGGGGTGGAGAAGAGAATATTTGACATAAATTTGGGTGGAGTGTATACTA
GCAATGGCCAATGGAAGGAGAAGCTTGGATTAGGGGTTAAACGAAACCGTAAAGCAACCAAGCCCATAAAACCCCCCTGCCACAGCGCAAGCGAAGTCTT
CACATTTCCCAGTTCCGTATTATCTTGTGCGAAGCCAGAGTACGCAGAAATGGGTAGCGTGGAAGATATCCTAGGGGAACTCAACAGAGACTCCTTCATC
TCTCTGCTGGAGAAGGTGATCGGAGAATCGGAACATGTCCAGAACAACCCGCCGGAGCTGATTCCACAGGAGGTTAGGGTTGCGAATCACGTCCTGGAAG
CCCTCCGCCCTTTCAGTACCGAGACAGGAGGAGGCCCTTTGATCCTCAATCATGCCTCTTACTCACCTGGCAGAAGCAATCTCATCGTCGAGTACCCTGG
CACTGAGCCCGGCAAGGTCTTATCCTTCGTCGGGATGCACATGGACGTCGTCACTGCTAATCCCTCTGACTGGGAATTTAATCCATTTTCATTGAGCATT
GACGGGGATAAACTTCGTGGACGAGGGACAACTGATTGTCTGGGTCACGTTGCCCTTGTGGCTCAACTCATGAGGAAGCTGGGAGAGACGAAGCCTAAAT
TGAAGTCTACCGTAGTTGCTGTTTTCATAGCTAGTGAAGAGAACTCTTCCATTACAGGGATTGGAGTCGACCAGCTTGTGAAGAATGGTCTTCTTGAGAA
GCTGAAAACTGGACCTCTATACTGGATTGATACAGCTGACAAACAGCCCTGCATTGGTACTGGTGGTATGATACCATGGAAAATTCACGTCACTGGGAAA
CTTTTCCACAGTGGTTTACCTCACAAGGCCATAAACGCTTTGGAGTTAGGCATGGAAGCAATTAAAGAGATACAGTCGCGCTTTTATAAGGACTTCCCAG
CTCATCCCAAGGAGAAAGTTTATGGATTCGCTACACCATCAACGATGAAACCAACACAATGGAATTATCCTGTTGGTGGTATCAATCAAATTCCAGGAGA
ATGCACAGTTTCTGGGGATGTCAGGTTAACTCCCTTTTACAATGTATCAGATGTTATAAAGAACCTGCAGAAGTATGTAGATGACATAAATGAGAACATA
GAGAAGCTAGATACCCGGGGTCCAGTTTCAAAGTATGTTCTTCCAGACGAGAACTTGAGAGGGAGACTTGTTATATCTTTCGATGAAGCAACGTCAGGAG
TTGCATGTGATCTCGACTCTCGCGGCTTTCATGTGCTGTGCAAAGCAACGGAGAAGGTAGTCGGCCATGTAAAGCCCTACTCCATCACTGGAAGTTTGCC
ACTGATACGCGAATTGCAGGAGGAAGGTTTTGATGTTCAAACTGCAGGCTACGGCTTGATGGCAACATACCATGCCAAGAACGAGTACTGCCTGTTCTCT
GATATGGCTCAAGGCTACAGGATTTTCACCAGCATCATCTCTCAGCTGGAAGATTAG
AA sequence
>Lus10040090 pacid=23174217 polypeptide=Lus10040090 locus=Lus10040090.g ID=Lus10040090.BGIv1.0 annot-version=v1.0
MEQLTDGIDVHGSGIGNGVEKRIFDINLGGVYTSNGQWKEKLGLGVKRNRKATKPIKPPCHSASEVFTFPSSVLSCAKPEYAEMGSVEDILGELNRDSFI
SLLEKVIGESEHVQNNPPELIPQEVRVANHVLEALRPFSTETGGGPLILNHASYSPGRSNLIVEYPGTEPGKVLSFVGMHMDVVTANPSDWEFNPFSLSI
DGDKLRGRGTTDCLGHVALVAQLMRKLGETKPKLKSTVVAVFIASEENSSITGIGVDQLVKNGLLEKLKTGPLYWIDTADKQPCIGTGGMIPWKIHVTGK
LFHSGLPHKAINALELGMEAIKEIQSRFYKDFPAHPKEKVYGFATPSTMKPTQWNYPVGGINQIPGECTVSGDVRLTPFYNVSDVIKNLQKYVDDINENI
EKLDTRGPVSKYVLPDENLRGRLVISFDEATSGVACDLDSRGFHVLCKATEKVVGHVKPYSITGSLPLIRELQEEGFDVQTAGYGLMATYHAKNEYCLFS
DMAQGYRIFTSIISQLED

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT4G17830 Peptidase M20/M25/M40 family p... Lus10040090
[exp]
0 1
AT4G22920 ATNYE1, SGR1, S... non-yellowing 1 (.1) Lus10001194
[exp]
1.7 0.9309
AT4G39090 EMB3005, RD19A,... RESPONSIVE TO DEHYDRATION 19A,... Lus10028797
[exp]
2.8 0.9223
AT4G18880 HSF AT-HSFA4A ,HSF ... ARABIDOPSIS THALIANA HEAT SHOC... Lus10015237
[exp]
3.5 0.9181
AT3G03800 ATSYP131, SYP13... syntaxin of plants 131 (.1) Lus10031553
[exp]
3.9 0.8909
AT2G46550 unknown protein Lus10012748
[exp]
5.0 0.9063
AT5G62740 AtHIR4, ATHIR1 hypersensitive induced reactio... Lus10033099
[exp]
5.9 0.9028
AT3G14250 RING/U-box superfamily protein... Lus10024093
[exp]
6.0 0.9142
AT1G25500 Plasma-membrane choline transp... Lus10041476
[exp]
7.2 0.8803
AT3G56310 Melibiase family protein (.1.2... Lus10029046
[exp]
9.5 0.9015
AT3G06390 Uncharacterised protein family... Lus10012808
[exp]
10.7 0.9043

Lus10040090 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.