Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G32330 424 / 5e-145 HSF ATHSFA1D heat shock transcription factor A1D (.1) AT4G17750 372 / 1e-124 HSF ATHSFA1A, ATHSF1, HSF1 ARABIDOPSIS THALIANA CLASS A HEAT SHOCK FACTOR 1A, ARABIDOPSIS THALIANA HEAT SHOCK FACTOR 1, heat shock factor 1 (.1) AT5G16820 366 / 2e-122 HSF ATHSF3, ATHSFA1B, HSF3 ARABIDOPSIS THALIANA CLASS A HEAT SHOCK FACTOR 1B, ARABIDOPSIS HEAT SHOCK FACTOR 3, heat shock factor 3 (.1.2) AT3G02990 347 / 3e-115 HSF ATHSFA1E heat shock transcription factor A1E (.1) AT2G26150 245 / 2e-77 HSF ATHSFA2 heat shock transcription factor A2 (.1.2) AT3G22830 242 / 3e-75 HSF AT-HSFA6B ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A6B, heat shock transcription factor A6B (.1) AT5G03720 209 / 9e-63 HSF AT-HSFA3 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A3, heat shock transcription factor A3 (.1) AT3G51910 195 / 4e-59 HSF AT-HSFA7A ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A7A, heat shock transcription factor A7A (.1) AT1G67970 197 / 2e-58 HSF AT-HSFA8 heat shock transcription factor A8 (.1) AT4G13980 199 / 3e-58 HSF AT-HSFA5 HEAT SHOCK TRANSCRIPTION FACTOR A5, winged-helix DNA-binding transcription factor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030956 [exp] 865 / 0 AT1G32330 451 / 1e-155 heat shock transcription factor A1D (.1) Lus10000312 [exp] 538 / 0 AT1G32330 437 / 1e-150 heat shock transcription factor A1D (.1) Lus10011065 [exp] 531 / 0 AT1G32330 441 / 5e-152 heat shock transcription factor A1D (.1) Lus10040911 [exp] 323 / 7e-106 AT5G16820 370 / 4e-124 ARABIDOPSIS THALIANA CLASS A HEAT SHOCK FACTOR 1B, ARABIDOPSIS HEAT SHOCK FACTOR 3, heat shock factor 3 (.1.2) Lus10006618 [exp] 248 / 6e-78 AT3G22830 352 / 3e-119 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A6B, heat shock transcription factor A6B (.1) Lus10039376 [exp] 245 / 7e-77 AT3G22830 363 / 3e-124 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A6B, heat shock transcription factor A6B (.1) Lus10014698 [exp] 227 / 8e-70 AT3G22830 363 / 4e-124 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A6B, heat shock transcription factor A6B (.1) Lus10022083 [exp] 224 / 1e-68 AT3G22830 314 / 1e-104 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A6B, heat shock transcription factor A6B (.1) Lus10000492 [exp] 222 / 4e-68 AT3G22830 365 / 1e-124 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A6B, heat shock transcription factor A6B (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G138900 [exp] 562 / 0 AT1G32330 408 / 2e-138 heat shock transcription factor A1D (.1) Potri.003G095000 [exp] 492 / 2e-171 AT1G32330 375 / 2e-125 heat shock transcription factor A1D (.1) Potri.013G079800 [exp] 362 / 7e-121 AT5G16820 344 / 1e-113 ARABIDOPSIS THALIANA CLASS A HEAT SHOCK FACTOR 1B, ARABIDOPSIS HEAT SHOCK FACTOR 3, heat shock factor 3 (.1.2) Potri.002G048200 [exp] 253 / 4e-80 AT3G22830 347 / 7e-118 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A6B, heat shock transcription factor A6B (.1) Potri.005G214800 [exp] 252 / 6e-80 AT3G22830 355 / 4e-121 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A6B, heat shock transcription factor A6B (.1) Potri.006G226800 [exp] 248 / 9e-78 AT2G26150 355 / 1e-121 heat shock transcription factor A2 (.1.2) Potri.008G157600 [exp] 246 / 1e-77 AT3G22830 388 / 3e-134 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A6B, heat shock transcription factor A6B (.1) Potri.010G082000 [exp] 240 / 2e-75 AT3G22830 376 / 3e-129 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A6B, heat shock transcription factor A6B (.1) Potri.014G141400 [exp] 236 / 1e-72 AT4G18880 251 / 4e-79 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A4A, heat shock transcription factor A4A (.1) Potri.010G104300 [exp] 233 / 5e-72 AT1G67970 319 / 7e-107 heat shock transcription factor A8 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00447 [flax] [poplar] HSF_DNA-bind HSF-type DNA-binding
Representative CDS sequence Show only first row Show all	>Lus10040091 pacid=23173898 polypeptide=Lus10040091 locus=Lus10040091.g ID=Lus10040091.BGIv1.0 annot-version=v1.0 ATGGATGAGGCAGCCACTAAAGGAGATAGCCCCGACACTTTGACTACCAGTGGTGGCGGGGGGGGGGGGGAAGAGAAGGCGGGAGGAGCACGAGCAGCAC CGGTGCCGATGACGCCACAGTCTAACACGCCGCCGCCTTTCCTTAGCAAGACGTATGACATGGTGGATGACCCTGCTTCCGACTCCATCGTGTCCTGGAG TTCCACGAATAACAGCTTCGTAGTGTGGAATCCGCCTGAGTTCGCTCGCGACATCCTTCCCAAGTATTTCAAGCATAACAACTTCTCCAGCTTCGTTAGG CAGCTCAATACCTATGGTTTCCGGAAAGTTGATCCAGATAGATGGGAATTTGCGAATGAGGGATTCTTGAGAGGGCAAAAGCACCTGCTTAAAAGCATAA GCCGACGGAAACCAGCACATGGACATAACCAGCAGCAAGTGCAACCATCAAATGGACAGATCTCATCCGCTGCTTCTTGTGTGGAGGTTGGTAAATTTGG GCTCGGAGAGGAAGTCGAGAGGCTCAAGAGGGACAAAAATGTACTTATGCAGGAACTTGTTCGGTTAAAACAGCAGCAACAGTCTACTGATGGCCAGTTG CAGACCATGGTAAAGCGGCTTCAAGGGATGGAACAGAGGCAGCAACAAATGATGTCATTTTTGGCAAAGGCTTTGCAGAGCCCTGGTTTCTTTTCTCAGT TTGTACAACAGCAAAATGAAAACAATAGGCGTATAGCAGAAACTAACAAAAAACGGAGGCTCAAGCAAGACGGGACCACCAAGAATGAGTCTTCTACTGT TCCGGACGGGCAGATTGTCAAGTATCAGCCATCTACTAACGAGGCTGCGAATGTCATGTTCAGGCAGATAATGAATGGGGATGCTCCTTCGAGGTCAGAG TGTTACAACAATAGTTTTGATGGCTTCACTGGTGGCAATGTTTCATCACCCAGTGCCATGGACAGTGGAAACTCTCCAACTCGCGGATCAGCGGTTACAC TCCAGGAGGTTCCAGCAACTTCAGGGTCAGGGGTAATGCCTGAGCTTTCTCAAATGCCGGAAATGGTTCCTGAAAGTATGGATGATGATATTCCAGGAGA CGATTATATGGAACCAGATACAGGTGATGATTGCTTCGTACAGTCTTCATTAGGTATGGATGGAATGATGCCCTTTGATCTTGGTATCATACCTCCTGAT CTTGAAGATAATCTTGATGCATTTCTAGCTCGTGACTTCTGGGATGACCTTGTGCAAAGCCCGATTCTTGATGACATTGAATCAAGTTCCATGGACAACA AAGCTTCCAGCGATGATGTACAACCAATGGAGAAGGAATGGGAGAAGAGCGAGCATGTGGATCAGTTGACTGAGCAAATGGGGCATCTCTCATCAGAAGC AAAGAAGCTGCTCTAG
AA sequence Show only first row Show all	>Lus10040091 pacid=23173898 polypeptide=Lus10040091 locus=Lus10040091.g ID=Lus10040091.BGIv1.0 annot-version=v1.0 MDEAATKGDSPDTLTTSGGGGGGEEKAGGARAAPVPMTPQSNTPPPFLSKTYDMVDDPASDSIVSWSSTNNSFVVWNPPEFARDILPKYFKHNNFSSFVR QLNTYGFRKVDPDRWEFANEGFLRGQKHLLKSISRRKPAHGHNQQQVQPSNGQISSAASCVEVGKFGLGEEVERLKRDKNVLMQELVRLKQQQQSTDGQL QTMVKRLQGMEQRQQQMMSFLAKALQSPGFFSQFVQQQNENNRRIAETNKKRRLKQDGTTKNESSTVPDGQIVKYQPSTNEAANVMFRQIMNGDAPSRSE CYNNSFDGFTGGNVSSPSAMDSGNSPTRGSAVTLQEVPATSGSGVMPELSQMPEMVPESMDDDIPGDDYMEPDTGDDCFVQSSLGMDGMMPFDLGIIPPD LEDNLDAFLARDFWDDLVQSPILDDIESSSMDNKASSDDVQPMEKEWEKSEHVDQLTEQMGHLSSEAKKLL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G32330	HSF	ATHSFA1D	heat shock transcription facto...		Lus10040091 [exp]	0	1
AT2G37860		LCD1	LOWER CELL DENSITY 1, Protein ...		Lus10012657 [exp]	2.0	0.8979
AT4G27780		ACBP2	acyl-CoA binding protein 2 (.1...		Lus10005910 [exp]	2.0	0.9114
AT3G56490		HIT3, HINT1	HISTIDINE TRIAD NUCLEOTIDE-BIN...		Lus10031011 [exp]	2.8	0.9150
AT2G28910		CXIP4	CAX interacting protein 4 (.1)		Lus10005458 [exp]	3.5	0.9026
AT3G15140			Polynucleotidyl transferase, r...		Lus10005381 [exp]	4.4	0.8666
AT5G44710			unknown protein		Lus10038399 [exp]	4.6	0.8873
AT2G20140		RPT2b	regulatory particle AAA-ATPase...		Lus10019995 [exp]	4.7	0.8648
AT5G22060		ATJ2	ARABIDOPSIS THALIANA DNAJ HOMO...		Lus10002733 [exp]	4.9	0.8862
AT3G58030			RING/U-box superfamily protein...		Lus10021063 [exp]	5.7	0.8803
AT3G10860			Cytochrome b-c1 complex, subun...		Lus10019118 [exp]	8.5	0.8621

Compare expression of checked genes

Lus10040091 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.