Plant FIBer expression Database

Lus10040093 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G46850 115 / 6e-32 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10030954
[exp]
274 / 6e-96 AT5G46850 119 / 2e-33 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.003G095200
[exp]
140 / 3e-41 AT5G46850 216 / 2e-68 unknown protein
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF08320 PIG-X PIG-X / PBN1
Representative CDS sequence
>Lus10040093 pacid=23173947 polypeptide=Lus10040093 locus=Lus10040093.g ID=Lus10040093.BGIv1.0 annot-version=v1.0
ATGGGCCTGGGAAGTGAAAGCCCATACCTGTTCAGATTTGGAAGATTTTTGTTCCTACTCGCATATGGCCGTGTCGCTGTCTTCGGAGACACAAATTTGG
AGTTGCCTTCAGTGTCTTCTAACCGATCCGCCGTTGAGATTCACATGGATCTTGAGCACAGCATTTCTTCAGGAAGCATGACTGGTGCGGGAATCAAGGT
CAATCTTCCATTGCATGCCCGTTATCCGCCATTGCATGAAAGTGGTTTCTCAAAAGTAACATTTGGTACACCGGATCTGCTCGTGAGCTGCAACGTGAAA
GGAAGCTTGGACACGAGTGGATGCTTGCTTGCGCCGAACTACAACAACCACAAGCTGAAGACTGATGCTGTATGGGAAATACCGTGTGGGATTGAGAGCC
ATAAAAACATGGTCACAATCGTCACCTTTGCTACTGCCTTTGTATCGACCCTTGTAATTGTACTTGCATCTATGTTTCACTCAGAACTTCATCGTTGA
AA sequence
>Lus10040093 pacid=23173947 polypeptide=Lus10040093 locus=Lus10040093.g ID=Lus10040093.BGIv1.0 annot-version=v1.0
MGLGSESPYLFRFGRFLFLLAYGRVAVFGDTNLELPSVSSNRSAVEIHMDLEHSISSGSMTGAGIKVNLPLHARYPPLHESGFSKVTFGTPDLLVSCNVK
GSLDTSGCLLAPNYNNHKLKTDAVWEIPCGIESHKNMVTIVTFATAFVSTLVIVLASMFHSELHR

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G46850 unknown protein Lus10040093
[exp]
0 1
AT2G41475 Embryo-specific protein 3, (AT... Lus10043273
[exp]
5.5 0.7169
AT4G39080 VHA-A3 vacuolar proton ATPase A3 (.1) Lus10017488
[exp]
8.1 0.6226
AT3G14080 Small nuclear ribonucleoprotei... Lus10013161
[exp]
8.2 0.7025
AT1G31817 NFD3 NUCLEAR FUSION DEFECTIVE 3, Ri... Lus10007591
[exp]
9.1 0.7277
AT5G45390 NCLPP3, NCLPP4,... NUCLEAR-ENCODED CLP PROTEASE P... Lus10012156
[exp]
11.5 0.7117
AT3G57930 unknown protein Lus10031233
[exp]
12.7 0.6678
AT5G41685 Mitochondrial outer membrane t... Lus10004754
[exp]
17.8 0.6737
AT1G17350 NADH:ubiquinone oxidoreductase... Lus10035323
[exp]
18.3 0.5344
AT5G20720 CHCPN10, ATCPN2... CHLOROPLAST CHAPERONIN 10, cha... Lus10021244
[exp]
22.5 0.6597
AT2G22170 Lipase/lipooxygenase, PLAT/LH2... Lus10037491
[exp]
27.0 0.6771

Lus10040093 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.