Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G46860 347 / 3e-121 SGR3, ATVAM3, ATSYP22, VAM3 SHOOT GRAVITROPISM 3, ARABIDOPSIS THALIANA VACUOLAR MORPHOLOGY 3, ARABIDOPSIS THALIANA SYNTAXIN OF PLANTS 22, Syntaxin/t-SNARE family protein (.1) AT4G17730 322 / 1e-111 ATSYP23, SYP23 syntaxin of plants 23 (.1.2) AT5G16830 265 / 6e-89 ATSYP21, ATPEP12, SYP21, PEP12P syntaxin of plants 21 (.1) AT1G32270 171 / 2e-50 ATSYP24 SYNTAXIN 24, syntaxin, putative (.1) AT4G02195 47 / 8e-06 ATTLG2B, ATSYP42, SYP42 syntaxin of plants 42 (.1) AT3G03800 46 / 1e-05 ATSYP131, SYP131 syntaxin of plants 131 (.1) AT5G26980 45 / 2e-05 ATSYP41, ATTLG2A, SYP41 syntaxin of plants 41 (.1.2) AT3G05710 45 / 3e-05 ATSYP43, SYP43 syntaxin of plants 43 (.1.2) AT3G52400 45 / 3e-05 ATSYP122, SYP122 syntaxin of plants 122 (.1) AT1G61290 45 / 3e-05 ATSYP124, SYP124 syntaxin of plants 124 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030953 [exp] 451 / 3e-162 AT5G46860 417 / 9e-149 SHOOT GRAVITROPISM 3, ARABIDOPSIS THALIANA VACUOLAR MORPHOLOGY 3, ARABIDOPSIS THALIANA SYNTAXIN OF PLANTS 22, Syntaxin/t-SNARE family protein (.1) Lus10000311 [exp] 182 / 7e-58 AT5G46860 217 / 5e-72 SHOOT GRAVITROPISM 3, ARABIDOPSIS THALIANA VACUOLAR MORPHOLOGY 3, ARABIDOPSIS THALIANA SYNTAXIN OF PLANTS 22, Syntaxin/t-SNARE family protein (.1) Lus10011064 [exp] 184 / 8e-53 AT1G45616 366 / 2e-111 receptor like protein 6 (.1) Lus10020683 [exp] 50 / 6e-07 AT3G05710 361 / 7e-126 syntaxin of plants 43 (.1.2) Lus10029864 [exp] 48 / 3e-06 AT3G05710 510 / 0.0 syntaxin of plants 43 (.1.2) Lus10015215 [exp] 47 / 7e-06 AT3G05710 223 / 3e-72 syntaxin of plants 43 (.1.2) Lus10031466 [exp] 46 / 2e-05 AT3G05710 506 / 0.0 syntaxin of plants 43 (.1.2) Lus10011244 [exp] 45 / 4e-05 AT1G61290 487 / 2e-175 syntaxin of plants 124 (.1) Lus10020089 [exp] 45 / 4e-05 AT1G61290 467 / 2e-166 syntaxin of plants 124 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G138500 [exp] 394 / 1e-139 AT5G46860 377 / 3e-133 SHOOT GRAVITROPISM 3, ARABIDOPSIS THALIANA VACUOLAR MORPHOLOGY 3, ARABIDOPSIS THALIANA SYNTAXIN OF PLANTS 22, Syntaxin/t-SNARE family protein (.1) Potri.003G095300 [exp] 391 / 1e-138 AT5G46860 368 / 2e-129 SHOOT GRAVITROPISM 3, ARABIDOPSIS THALIANA VACUOLAR MORPHOLOGY 3, ARABIDOPSIS THALIANA SYNTAXIN OF PLANTS 22, Syntaxin/t-SNARE family protein (.1) Potri.014G145200 [exp] 195 / 1e-61 AT5G46860 263 / 4e-88 SHOOT GRAVITROPISM 3, ARABIDOPSIS THALIANA VACUOLAR MORPHOLOGY 3, ARABIDOPSIS THALIANA SYNTAXIN OF PLANTS 22, Syntaxin/t-SNARE family protein (.1) Potri.006G202200 [exp] 51 / 2e-07 AT3G11820 412 / 3e-145 PENETRATION1, SYNTAXIN RELATED PROTEIN 1, syntaxin of plants 121 (.1.2) Potri.005G020800 [exp] 51 / 3e-07 AT3G05710 462 / 1e-164 syntaxin of plants 43 (.1.2) Potri.013G011100 [exp] 49 / 1e-06 AT3G05710 457 / 7e-163 syntaxin of plants 43 (.1.2) Potri.016G068600 [exp] 47 / 4e-06 AT3G11820 421 / 5e-149 PENETRATION1, SYNTAXIN RELATED PROTEIN 1, syntaxin of plants 121 (.1.2) Potri.004G035400 [exp] 47 / 6e-06 AT1G61290 490 / 8e-177 syntaxin of plants 124 (.1) Potri.002G200400 [exp] 47 / 6e-06 AT5G26980 397 / 1e-139 syntaxin of plants 41 (.1.2) Potri.011G043700 [exp] 45 / 2e-05 AT1G61290 456 / 3e-163 syntaxin of plants 124 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0445 [flax] [poplar] SNARE-fusion PF00804 [flax] [poplar] Syntaxin Syntaxin CL0445 [flax] [poplar] PF05739 [flax] [poplar] SNARE SNARE domain
Representative CDS sequence Show only first row Show all	>Lus10040094 pacid=23174031 polypeptide=Lus10040094 locus=Lus10040094.g ID=Lus10040094.BGIv1.0 annot-version=v1.0 ATGAGCTTTCAAGATCTAGAGGCCGGACGCCCTCTCGCCTCCCGGCGAGACCTTATCAACGGCAGGCAAGACGCCACTCAGGCGGTTGCCTCCGGTATAT TCCAGATCAATACCGCCGTCTCCACTTTCCAGCGCCTCGTGAATACCCTTGGCACTCCCAAGGATACTCCTGAGCTCCGAGAGAAGCTGCACAAAACTAG GTTACATATTGGTCAGCTGGTGAAGGATACATCTGCAAGACTTAAACAAGCGAGTGACACTGATCATCATGCTGGAGTTACTCAAAGTAAGAAGATTGCG GATGCAAAACTTGCAAAGGATTTTCAAGCAGTTTTGAAAGAATTCCAGAAGGCTCAACGTCTCTCAGCTGAGAGGGAAACAGCATATTCACCATTTGTTG CTCAGGCCAATCTTCCTTCTAGCTACCACGGCAATGACGTAGATGCAAGTTCAGATAAAATTCCCGAAGAACGTGTTCTTCTGATGGAGACAAAAAGACA AGAAGTCGTGCTATTAGATAACGAGATCGCGTTCAATGAGGCCATAATTGAGGAAAGAGAGCAGGGAATACATGAGATTCAGCAGCAGATTGGAGAGGTG AACGAGATTTTTAAAGATCTAGCTGTCCTTGTACATGAACAAGGAACTATGATCGATGATATTGGCTCCCACATTGATAATGCACATGCTGCAACTGCAC AAGGGAGACAACAGCTCGTGAAAGCTGCAAAAACCCAAAAATCAAACTCGTCCCTGACCTGCCTACTCTTGGTCATATTCGGGATCGTTCTCCTTATCGT AATCATAGTGCTCGCAGCCTAA
AA sequence Show only first row Show all	>Lus10040094 pacid=23174031 polypeptide=Lus10040094 locus=Lus10040094.g ID=Lus10040094.BGIv1.0 annot-version=v1.0 MSFQDLEAGRPLASRRDLINGRQDATQAVASGIFQINTAVSTFQRLVNTLGTPKDTPELREKLHKTRLHIGQLVKDTSARLKQASDTDHHAGVTQSKKIA DAKLAKDFQAVLKEFQKAQRLSAERETAYSPFVAQANLPSSYHGNDVDASSDKIPEERVLLMETKRQEVVLLDNEIAFNEAIIEEREQGIHEIQQQIGEV NEIFKDLAVLVHEQGTMIDDIGSHIDNAHAATAQGRQQLVKAAKTQKSNSSLTCLLLVIFGIVLLIVIIVLAA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G46860		SGR3, ATVAM3, A...	SHOOT GRAVITROPISM 3, ARABIDOP...		Lus10040094 [exp]	0	1
AT2G15860			unknown protein		Lus10021000 [exp]	1.0	0.8731
AT2G30395	OFP	ATOFP17, OFP17	ovate family protein 17 (.1)		Lus10024191 [exp]	2.0	0.8158
AT2G15860			unknown protein		Lus10023852 [exp]	8.5	0.7676
AT1G26560		BGLU40	beta glucosidase 40 (.1)		Lus10037098 [exp]	10.5	0.6918
AT5G58320			Kinase interacting (KIP1-like)...		Lus10019111 [exp]	15.2	0.7756
AT5G14000	NAC	ANAC084	NAC domain containing protein ...		Lus10032004 [exp]	21.9	0.6863
AT1G22170			Phosphoglycerate mutase family...		Lus10033465 [exp]	22.0	0.7549
AT5G11730			Core-2/I-branching beta-1,6-N-...		Lus10007457 [exp]	22.5	0.7668
AT2G40810		ATATG18C	homolog of yeast autophagy 18C...		Lus10001580 [exp]	23.9	0.7367
AT4G00950		MEE47	maternal effect embryo arrest ...		Lus10030238 [exp]	31.1	0.6901

Compare expression of checked genes

Lus10040094 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.