Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G17720 379 / 2e-132 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT5G46870 331 / 5e-114 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT5G16840 271 / 4e-91 BPA1 binding partner of acd11 1 (.1.2.3) AT1G67950 240 / 1e-78 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3), RNA-binding (RRM/RBD/RNP motifs) family protein (.4) AT5G32450 217 / 1e-69 RNA binding (RRM/RBD/RNP motifs) family protein (.1) AT1G14340 153 / 3e-45 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT3G01210 118 / 1e-31 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT5G09880 43 / 0.0002 Splicing factor, CC1-like (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030952 [exp] 543 / 0 AT4G17720 382 / 7e-134 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10011063 [exp] 399 / 1e-140 AT4G17720 333 / 2e-114 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10000676 [exp] 363 / 3e-126 AT4G17720 313 / 1e-106 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10025743 [exp] 276 / 8e-93 AT4G17720 295 / 4e-100 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10035919 [exp] 213 / 4e-68 AT4G17720 226 / 3e-73 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10010660 [exp] 196 / 1e-60 AT5G32450 352 / 3e-122 RNA binding (RRM/RBD/RNP motifs) family protein (.1) Lus10013651 [exp] 196 / 3e-59 AT5G32450 343 / 5e-117 RNA binding (RRM/RBD/RNP motifs) family protein (.1) Lus10030491 [exp] 158 / 9e-47 AT1G14340 300 / 1e-103 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10034580 [exp] 156 / 1e-45 AT1G67950 177 / 4e-54 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3), RNA-binding (RRM/RBD/RNP motifs) family protein (.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G138400 [exp] 418 / 1e-148 AT4G17720 365 / 2e-127 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.003G095400 [exp] 388 / 1e-136 AT4G17720 355 / 9e-124 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.010G103600 [exp] 277 / 1e-92 AT1G67950 280 / 6e-94 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3), RNA-binding (RRM/RBD/RNP motifs) family protein (.4) Potri.019G037600 [exp] 206 / 2e-65 AT5G32450 400 / 2e-142 RNA binding (RRM/RBD/RNP motifs) family protein (.1) Potri.013G055100 [exp] 199 / 1e-62 AT5G32450 389 / 9e-138 RNA binding (RRM/RBD/RNP motifs) family protein (.1) Potri.017G081500 [exp] 151 / 2e-44 AT1G14340 239 / 6e-80 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.017G081400 [exp] 148 / 4e-43 AT1G14340 229 / 3e-75 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.007G009800 [exp] 47 / 8e-06 AT5G09880 519 / 9e-180 Splicing factor, CC1-like (.1) Potri.004G177000 [exp] 45 / 4e-05 AT2G16940 538 / 0.0 Splicing factor, CC1-like (.1.2.3) Potri.009G137200 [exp] 44 / 8e-05 AT2G16940 535 / 0.0 Splicing factor, CC1-like (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Lus10040095 pacid=23174132 polypeptide=Lus10040095 locus=Lus10040095.g ID=Lus10040095.BGIv1.0 annot-version=v1.0 ATGCCGGTGAAAACTGTGAAAGTGAGTAATGTTTCTCTCAAGGCTACTGATAAGGACCTCCAGGAGTTCTTCTCCTTCTCTGGTGATATTGAATACGTCG AGATGCAAAGCGTGGATGAGAAATCTCAAGTGGGGTACGTCACTTTTAAAGATTCTCAAGGTGCAGATACTGCTGTCCTTCTTACGGGAGCAACTATAGT TGATCTTGCTGTCACCATAACACCAGATCCAGATTATAAGCTGCCACAGGCTGTTCTGTTGGCAATGGAAAGTGAAAATAGAAACCCAGCTGAAGCCGAC TCGGCGCTTAGGAAGGCAGAAGACGTTGTCAGCGGCATGCTAGCCAAGGGTTTCATCTTAGGGAAAGATGCTGTCAACAAAGCGAAGTCATTTGATGAAA AGCACCAACTTACTTCAACTGGGTTAGCTAAAGTTGCATCCTTTGACAAAAAGTTGGGCCTGAGTGACAAGATAACTGCTAGCACAACCGTGGTGGGGGA CAAAGTCCGCGAGGTGGACCAGAAGTTTCAGGTTTCCGAGAAGACCAAGTCAGCATTCGCCGCAGCAGAGCAAAAAGTCAGCAGTGCAGGATCGGCCATA ATGAAGAACCGGTACGTGTTCACCAGCGCGGCCTGGGTAAGCGGTGCATTCAGCAAAGTCGCAAAGGCAGCCGAGGATGTAGGGCAGAAGGCCAAGGAGA AAGTAGGAATGGCTGAAGAAGAGCAAAGGAGGAAAGTAGTGGAAGACTTTGCTGAGGTCCACCTATCAGAGTCGCCAAAGGTGTCTCGTAACGATCACGA GCAACAATCCGAGCCAAAATATCAGCAGATGTCGTCACCTCCAGACTCGCCACCTTCTAGTAAATCTCCTTCCAAGCCTGCCCCTGTTACAGGCTTGATC CTCTGA
AA sequence Show only first row Show all	>Lus10040095 pacid=23174132 polypeptide=Lus10040095 locus=Lus10040095.g ID=Lus10040095.BGIv1.0 annot-version=v1.0 MPVKTVKVSNVSLKATDKDLQEFFSFSGDIEYVEMQSVDEKSQVGYVTFKDSQGADTAVLLTGATIVDLAVTITPDPDYKLPQAVLLAMESENRNPAEAD SALRKAEDVVSGMLAKGFILGKDAVNKAKSFDEKHQLTSTGLAKVASFDKKLGLSDKITASTTVVGDKVREVDQKFQVSEKTKSAFAAAEQKVSSAGSAI MKNRYVFTSAAWVSGAFSKVAKAAEDVGQKAKEKVGMAEEEQRRKVVEDFAEVHLSESPKVSRNDHEQQSEPKYQQMSSPPDSPPSSKSPSKPAPVTGLI L

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G17720			RNA-binding (RRM/RBD/RNP motif...		Lus10040095 [exp]	0	1
AT1G71860		ATPTP1, PTP1	protein tyrosine phosphatase 1...		Lus10028712 [exp]	3.3	0.9243
					Lus10041954 [exp]	4.5	0.9150
AT1G71860		ATPTP1, PTP1	protein tyrosine phosphatase 1...		Lus10006053 [exp]	5.3	0.9221
AT1G54140		TAF9, TAFII21	TBP-ASSOCIATED FACTOR 9, TATA ...		Lus10012411 [exp]	6.0	0.9155
AT2G38740			Haloacid dehalogenase-like hyd...		Lus10003018 [exp]	7.5	0.8909
AT3G61790			Protein with RING/U-box and TR...		Lus10004001 [exp]	10.1	0.9142
AT5G13430			Ubiquinol-cytochrome C reducta...		Lus10035118 [exp]	11.1	0.9161
AT4G34840		ATMTN2, ATMTAN2	ARABIDOPSIS METHYLTHIOADENOSIN...		Lus10042387 [exp]	13.0	0.8970
AT1G12050			fumarylacetoacetase, putative ...		Lus10010485 [exp]	14.3	0.9016
AT1G45000			AAA-type ATPase family protein...		Lus10041964 [exp]	16.0	0.8892

Compare expression of checked genes

Lus10040095 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.