Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G32190 396 / 6e-136 alpha/beta-Hydrolases superfamily protein (.1.2) AT3G30380 313 / 5e-104 alpha/beta-Hydrolases superfamily protein (.1.2) AT2G24320 310 / 5e-104 alpha/beta-Hydrolases superfamily protein (.1) AT4G31020 307 / 8e-103 alpha/beta-Hydrolases superfamily protein (.1.2) AT4G24760 297 / 6e-98 alpha/beta-Hydrolases superfamily protein (.1) AT3G01690 293 / 3e-96 alpha/beta-Hydrolases superfamily protein (.1) AT5G14390 292 / 5e-96 alpha/beta-Hydrolases superfamily protein (.1) AT5G38220 283 / 1e-92 alpha/beta-Hydrolases superfamily protein (.1.2.3) AT1G66900 276 / 3e-91 alpha/beta-Hydrolases superfamily protein (.1) AT1G13610 271 / 5e-88 alpha/beta-Hydrolases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030951 [exp] 549 / 0 AT1G32190 465 / 2e-163 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10031953 [exp] 313 / 4e-104 AT3G30380 571 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10035148 [exp] 313 / 7e-104 AT3G30380 579 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10040038 [exp] 307 / 1e-102 AT4G31020 491 / 3e-177 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10022307 [exp] 306 / 4e-101 AT5G14390 547 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10019604 [exp] 301 / 2e-100 AT4G31020 487 / 9e-176 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10017617 [exp] 291 / 1e-95 AT5G38220 508 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2.3) Lus10033575 [exp] 288 / 1e-94 AT5G38220 511 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2.3) Lus10042075 [exp] 276 / 2e-89 AT4G24760 523 / 0.0 alpha/beta-Hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G136400 [exp] 447 / 2e-156 AT1G32190 412 / 1e-142 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.003G096900 [exp] 443 / 3e-155 AT1G32190 387 / 7e-133 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.018G111400 [exp] 317 / 1e-106 AT4G31020 447 / 4e-160 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.006G188100 [exp] 311 / 2e-104 AT4G31020 440 / 3e-157 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.004G112300 [exp] 308 / 7e-102 AT3G30380 509 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.017G102500 [exp] 307 / 2e-101 AT3G30380 528 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.015G087100 [exp] 299 / 1e-98 AT4G24760 560 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.001G340000 [exp] 299 / 2e-98 AT5G14390 511 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.012G090800 [exp] 298 / 2e-98 AT4G24760 549 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.010G136900 [exp] 297 / 1e-97 AT3G30380 464 / 3e-164 alpha/beta-Hydrolases superfamily protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10040096 pacid=23173999 polypeptide=Lus10040096 locus=Lus10040096.g ID=Lus10040096.BGIv1.0 annot-version=v1.0 ATGGGTTGCAGTCTATCTCAATTAGCTGCCAAATTCGCCTTCTTCCCACCATCACCGCCGACTTACCAGATCAAGAAGAAGGACAATGGCAAACTGACGG TGGTCTCAACTTCTCCTTCTCCTTCACTTCCCTTACCTCTCCCCGATGACAACTCACTCGACGTCCTCCTCATTGACACCAAACGAGGCAACAAGATCGT CGCTTTCTACCTCAGAAACCCTTACGCCAGGCTCACTCTGCTCTACTCTCACGGCAATGCTGCTGACCTTGGTCAGCTCTACGACCTCTTCGTCCAGCTC AAGCTCAACCTCCGTGTCAATCTCATCGGGTTAGTCGCCGCGTCTTTCTTCCCGTGTTATCAAACAGTTACTGTGGAAAGTGGCAAATACGACTATTCTG GATATGGGGCCTCCACTGGTAAGCCGAGTGAGTCCAATACGTATGCTGATATAGAAGCAGTGTATCAGTGCCTTCAGACGGAGTATGGAGTTAGCCAGGA AGATCTTATCTTATACGGCCAGTCTGTGGGTAGTGGACCAACTTTGCACTTGGCAGCCAAGCTTCCAAGGCTGAGAGGGGTAGTCTTGCACAGTGCCATT CTTTCTGGTTTGCGAGTTCTCTGCCACGTTAAGTTCTCATTTTGCTTCGACATATACCGGAACATCAGGAAAATTCAGATGGTGAAAAGTCCCGTGCTAG TCATACATGGTACAGAGGATGATGTTGTGAACTGGTTACACGGGAACGGACTGTGGAAACTGGCAAGGGAACCATATGAACCTTTATGGATTAAAGGGGG CGGGCACTGCAACTTGGAGCTATACCCTGATTACATCCGCCATCTTTGCAGGTTCATATATGAGATGGAGAATATGACCACCAAAGACCACCTTAAAAGA ATACGAGAGAAGCTACAACTAAAGCCAAGGTTTACCCATCGTCATTCTTCTTCTTCCTCTTCCTCTACTTGCTGCTGTAGGCTTAGACTTTGGCGTCCTA GATGCTCAGGATGTTTCACACCAAGTTGCATAAAATGTCGCTGCCGCAGCAAATGCTTAGAAGATGGTTTAGGATGTTGGAAATGCTGCTCTCTACAACG GTGTTGGAACCCCTTTGTATGTCCAAAGTGTTCAACTCCCTCATGCTGCTCGTGTTCCTGCACCTGCTCCTGTTCATGGACGAGTTGCTTCCCGTCGTGC TGCTGCTGTTGCAGCACAGCGCTTTCTGCCAATAATGGAAAGCAGCAAGAAGGGCAATGA
AA sequence Show only first row Show all	>Lus10040096 pacid=23173999 polypeptide=Lus10040096 locus=Lus10040096.g ID=Lus10040096.BGIv1.0 annot-version=v1.0 MGCSLSQLAAKFAFFPPSPPTYQIKKKDNGKLTVVSTSPSPSLPLPLPDDNSLDVLLIDTKRGNKIVAFYLRNPYARLTLLYSHGNAADLGQLYDLFVQL KLNLRVNLIGLVAASFFPCYQTVTVESGKYDYSGYGASTGKPSESNTYADIEAVYQCLQTEYGVSQEDLILYGQSVGSGPTLHLAAKLPRLRGVVLHSAI LSGLRVLCHVKFSFCFDIYRNIRKIQMVKSPVLVIHGTEDDVVNWLHGNGLWKLAREPYEPLWIKGGGHCNLELYPDYIRHLCRFIYEMENMTTKDHLKR IREKLQLKPRFTHRHSSSSSSSTCCCRLRLWRPRCSGCFTPSCIKCRCRSKCLEDGLGCWKCCSLQRCWNPFVCPKCSTPSCCSCSCTCSCSWTSCFPSC CCCCSTALSANNGKQQEGQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G32190			alpha/beta-Hydrolases superfam...		Lus10040096 [exp]	0	1
AT4G37810			unknown protein		Lus10011570 [exp]	2.2	0.8128
AT1G32190			alpha/beta-Hydrolases superfam...		Lus10030951 [exp]	3.5	0.7991
AT1G68640	bZIP	PAN	PERIANTHIA, bZIP transcription...		Lus10041475 [exp]	11.7	0.7903
AT4G36920	AP2_ERF	FL1, FLO2, AP2	FLORAL MUTANT 2, FLOWER 1, APE...		Lus10019331 [exp]	12.6	0.6875
AT1G21320			nucleotide binding;nucleic aci...		Lus10018903 [exp]	14.0	0.7618
AT1G09840		AtHIR1, ATSK41	hypersensitive induced reactio...		Lus10037349 [exp]	15.6	0.7209
AT3G50620			P-loop containing nucleoside t...		Lus10009348 [exp]	20.7	0.8035
AT1G25580	NAC	ANAC008, SOG1	SUPPRESSOR OF GAMMA RADIATION ...		Lus10021708 [exp]	22.2	0.7569
AT1G08970	CCAAT	NF-YC9, HAP5C	"nuclear factor Y, subunit C9"...		Lus10021934 [exp]	28.3	0.7811
AT5G57380		VIN3	VERNALIZATION INSENSITIVE 3, F...		Lus10028170 [exp]	29.0	0.7298

Compare expression of checked genes

Lus10040096 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.