Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G55200 360 / 8e-114 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT3G13690 361 / 4e-113 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT5G56790 350 / 7e-110 Protein kinase superfamily protein (.1) AT1G70460 253 / 2e-73 AtPERK13, RHS10 proline-rich extensin-like receptor kinase 13, root hair specific 10 (.1) AT1G10620 251 / 3e-72 AtPERK11 proline-rich extensin-like receptor kinase 11, Protein kinase superfamily protein (.1) AT1G23540 248 / 3e-71 IGI1, AtPERK12 proline-rich extensin-like receptor kinase 12, INFLORESCENCE GROWTH INHIBITOR 1, proline-rich extensin like receptor kinase, Protein kinase superfamily protein (.1) AT2G18470 239 / 5e-69 AtPERK4, PERK4 proline-rich extensin-like receptor kinase 4, roline-rich extensin-like receptor kinase 4 (.1) AT5G38560 240 / 9e-69 AtPERK8 proline-rich extensin-like receptor kinase 8, Protein kinase superfamily protein (.1) AT1G68690 239 / 4e-68 AtPERK9 proline-rich extensin-like receptor kinase 9, Protein kinase superfamily protein (.1) AT3G24540 226 / 2e-65 AtPERK3 proline-rich extensin-like receptor kinase 3, Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030950 [exp] 1407 / 0 AT3G13690 422 / 2e-137 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10009559 [exp] 750 / 0 AT3G13690 418 / 2e-134 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10020385 [exp] 366 / 6e-117 AT5G61540 429 / 1e-147 N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.1), N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.2), N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.3) Lus10006148 [exp] 368 / 4e-116 AT3G13690 1084 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10001996 [exp] 369 / 6e-115 AT3G13690 649 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10008566 [exp] 334 / 6e-104 AT1G55200 657 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10020384 [exp] 296 / 3e-91 AT3G13690 101 / 2e-22 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10018944 [exp] 259 / 1e-76 AT3G13690 332 / 2e-105 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10011098 [exp] 245 / 8e-71 AT3G24550 700 / 0.0 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G034900 [exp] 366 / 2e-115 AT3G13690 1045 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.001G200000 [exp] 365 / 5e-115 AT3G13690 1051 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.006G150100 [exp] 345 / 8e-108 AT3G13690 773 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.014G038300 [exp] 304 / 5e-92 AT3G13690 537 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.002G130300 [exp] 301 / 5e-91 AT1G55200 535 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.005G185500 [exp] 274 / 4e-82 AT5G56790 348 / 1e-111 Protein kinase superfamily protein (.1) Potri.003G189850 [exp] 254 / 8e-74 AT5G56790 319 / 3e-99 Protein kinase superfamily protein (.1) Potri.008G189700 [exp] 248 / 3e-71 AT1G23540 642 / 0.0 proline-rich extensin-like receptor kinase 12, INFLORESCENCE GROWTH INHIBITOR 1, proline-rich extensin like receptor kinase, Protein kinase superfamily protein (.1) Potri.003G053301 [exp] 244 / 4e-71 AT1G52290 531 / 0.0 proline-rich extensin-like receptor kinase 15, Protein kinase superfamily protein (.1) Potri.001G035900 [exp] 243 / 1e-69 AT5G56790 311 / 1e-96 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Lus10040097 pacid=23174018 polypeptide=Lus10040097 locus=Lus10040097.g ID=Lus10040097.BGIv1.0 annot-version=v1.0 ATGAAGAGATCAGGAGCAGAAAGAGAAGTGATAGTGGTTGCAGTTGACGCCGGGAAAGAGATAACTGATTATGCAATTGAGTGGGTTCTTAGGAATGTCG CCACATCCCTTGATTCCTTCGTATGTCTTGCTATCCTCCCTTCCCATGAAACCATGGCTTCCCCTGCTCCTAGTAAAGCAACCCCTCAATCCTTACGTGG ACTGATGAAGAAATGGGTTATGAAGAAACTTTACCAGCAAGATGTGCATCCTGATTCTCTAAGGAAGGCAGTTCACCAGGAAGAGGCTCACAGAATCAAC AAAGTCTGCCTCGATACCATCCGCCATCTCTGCCGGATTCACAAGAAACAGCTGCAAACCCAAGTCAAAGTTATAACCGATGCACAGCTCGGCTCTGTTG CATCTACTGCCATAGATATTGAAGCTACCTGGGTTGTTCTTGATAGTCGGCTGAAGAAAGAAGGGGATTTCTGCATGAGACAACTGAAATGCAACATTGT GGTGATGGAGCAATCTGTCCCCAAAGTTATGAGAACAGCACTGAATCCTAATCGAACGAGGACAAGGGACAACTCCATTAATGCTTATCCAACTAATAAC CTGTTTCTGGAGCAGTACTCTCGCAAGGATGACGATGATGATGATGCGTCCAATCCTAGCAAAACTAGCTCTGGAGCAAATAGCGATCAAGGGCCGGTAA GCAGTCCAGATGAGGACAGTACTTTCAGGAAGAAGCCGTCCCATTCACTTGGCCCTCTGCTCCATTTGAAGTCAGAACTTGTCGTCAAAGGGGATATTCC GGTTGGGTTGACCCAGAACAATTCTGATGTTTCCCCCTCCACGGTACAGCCAATTAGAACACCCAATGGCAAGGTCAAGAGCTACAGCGGACTTTTAAAC TCTGGAAGAGGCAACAAGATAAACGGAAGAGCAGCCCTGGGGAGGAGATCATTCGATGTATCTGGGTTGGCCAGATTCCCACAAAGTTTCAAGGCAGACA ATAACAAGAACAACAACAACTCAGACTCAGCAGTAGTAGAAGAAGAAAAACAACATGATATAATTCACCCTGCAGGTCCGTCAAACATCGCAGAAAGAAG CTCAAGCATCCAAAGGGCTATTTCCATTTCAAGAAAACCTCTACCGATTCCACCCCCACTGTGCTCCATCTGCAAACACGTGGCTCCAATTTTCGGCAAG CCACCTAAGAAATTCAGTTTCAAGGAGATCAAGACGGCCACAGATGGGTTCTCCACTGAAAACATTTTGGCAGAGGGTGGACGTGCCCTTGTCTACAGAG GGAAGCTTTCGGATGGGGAGGCTGTCGCCGTGAAGAAGTACAAGGCGCCGGTCACTGCCCACAGTGCCTCAGAGTTTTGCTCAGAGGTGGAGGTGTTGAG CTTCGCTCACCACCGGAACTTGGTGATGTTGATTGGTTACTGCATCGAGACGGAAGAATGGCTGTTGGTTTATGAGTTGGCTTGTAATGGATCGTTGGAC AAGCATCTGTACGGGGATGAACAAGTAATAATGAGTTGGGAGCACAGAATGAAGGTTGCTGTTGGAGCTGGTAGAGGCTTGAGATACCTCCATGATGATT GCAGAGTTGGCTGCATTATTCATAGAGATTTCAGGCCCCAGAACATTCTACTTACTCATGAATTTGACGCCATGGTGGGAGAATTTGGGCTGGCAAGATG GCAATCAGATGGACAGCAAGCTGAGGAAACTCGAGTTATGGGCGCAACTGGATATTTAGCTCCAGAGTACATAGAAGCAGGGCTAATAACAGAGAAAGCT GATGTTTACGCATTTGGGATGGTTCTTCTGGAGCTTCTTTGTGGGGTAAAGGCCACCGAGTTCTCGACTAACATGGGACCTAAATTCTTGCTAGAATTGG GTCCTTGGTTGCTAGAGAGAGATGTAGTGAACGAGATACTTGACCCGCGGCTGCAGGATAGCTACGTCGAGAAGGAGGTGAAGAGTATGATCTATGCCTC TAGCTTGTGTCTATCACCTCACCCCCAGACCAGACCCAATATGTCCAAGGCATGTCACCTTCACGTTTTAAAGATCCTAGAAGGAGACATACCGCTAGAT GCAGTCAACAACAACAATGTACAACAAGAAGAAACCGCCTATCCGAACCAGTTTGTGAATATGATGTACGGTTCAGAGACGCCAGTTTTTTCATTGTCCA AGGCACCGTCATATCGCCGGAACATCTCATTTCTAGCCGCTAATGATCAGCATTTGAAACAATGTGACACGGATTTTAGCGGGGAGTACAATGCTTATAT ACAAGGTTCGTTGGCTAAATTCTTTCAAGGGTTGAACAGACATGGAAAATCTACTCCTGATCAAGAATCTATTCAGCTTTCAAAGGGAAATCCATGA
AA sequence Show only first row Show all	>Lus10040097 pacid=23174018 polypeptide=Lus10040097 locus=Lus10040097.g ID=Lus10040097.BGIv1.0 annot-version=v1.0 MKRSGAEREVIVVAVDAGKEITDYAIEWVLRNVATSLDSFVCLAILPSHETMASPAPSKATPQSLRGLMKKWVMKKLYQQDVHPDSLRKAVHQEEAHRIN KVCLDTIRHLCRIHKKQLQTQVKVITDAQLGSVASTAIDIEATWVVLDSRLKKEGDFCMRQLKCNIVVMEQSVPKVMRTALNPNRTRTRDNSINAYPTNN LFLEQYSRKDDDDDDASNPSKTSSGANSDQGPVSSPDEDSTFRKKPSHSLGPLLHLKSELVVKGDIPVGLTQNNSDVSPSTVQPIRTPNGKVKSYSGLLN SGRGNKINGRAALGRRSFDVSGLARFPQSFKADNNKNNNNSDSAVVEEEKQHDIIHPAGPSNIAERSSSIQRAISISRKPLPIPPPLCSICKHVAPIFGK PPKKFSFKEIKTATDGFSTENILAEGGRALVYRGKLSDGEAVAVKKYKAPVTAHSASEFCSEVEVLSFAHHRNLVMLIGYCIETEEWLLVYELACNGSLD KHLYGDEQVIMSWEHRMKVAVGAGRGLRYLHDDCRVGCIIHRDFRPQNILLTHEFDAMVGEFGLARWQSDGQQAEETRVMGATGYLAPEYIEAGLITEKA DVYAFGMVLLELLCGVKATEFSTNMGPKFLLELGPWLLERDVVNEILDPRLQDSYVEKEVKSMIYASSLCLSPHPQTRPNMSKACHLHVLKILEGDIPLD AVNNNNVQQEETAYPNQFVNMMYGSETPVFSLSKAPSYRRNISFLAANDQHLKQCDTDFSGEYNAYIQGSLAKFFQGLNRHGKSTPDQESIQLSKGNP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G55200			Protein kinase protein with ad...		Lus10040097 [exp]	0	1
AT4G10960		UGE5	UDP-D-glucose/UDP-D-galactose ...		Lus10003875 [exp]	2.0	0.8946
AT2G23770			protein kinase family protein ...		Lus10022488 [exp]	6.6	0.8195
AT2G46660		CYP78A6	"cytochrome P450, family 78, s...		Lus10030216 [exp]	7.2	0.8681
AT5G64240		AtMCP1a, ATMC3	metacaspase 1a, metacaspase 3 ...		Lus10035630 [exp]	7.6	0.8951
AT2G43990			unknown protein		Lus10008165 [exp]	8.0	0.8519
AT1G25270			nodulin MtN21 /EamA-like trans...		Lus10020819 [exp]	9.8	0.7691
AT3G13690			Protein kinase protein with ad...		Lus10030950 [exp]	10.5	0.8375
AT1G77920	bZIP		bZIP transcription factor fami...		Lus10018009 [exp]	11.0	0.8276
AT1G53050			Protein kinase superfamily pro...		Lus10000584 [exp]	14.0	0.7792
AT1G76040		CPK29	calcium-dependent protein kina...		Lus10017251 [exp]	16.0	0.8693

Compare expression of checked genes

Lus10040097 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.