Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G35390 640 / 0 Phosphoribosyltransferase family protein (.1.2.3) AT1G32380 623 / 0 PRS2 phosphoribosyl pyrophosphate (PRPP) synthase 2 (.1) AT2G44530 578 / 0 Phosphoribosyltransferase family protein (.1.2) AT1G10700 85 / 2e-17 PRS3 phosphoribosyl pyrophosphate (PRPP) synthase 3 (.1) AT2G42910 71 / 3e-13 Phosphoribosyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030948 [exp] 697 / 0 AT2G35390 613 / 0.0 Phosphoribosyltransferase family protein (.1.2.3) Lus10012074 [exp] 600 / 0 AT2G44530 605 / 0.0 Phosphoribosyltransferase family protein (.1.2) Lus10027908 [exp] 540 / 0 AT2G44530 555 / 0.0 Phosphoribosyltransferase family protein (.1.2) Lus10006202 [exp] 84 / 4e-17 AT1G10700 577 / 0.0 phosphoribosyl pyrophosphate (PRPP) synthase 3 (.1) Lus10036849 [exp] 83 / 6e-17 AT1G10700 577 / 0.0 phosphoribosyl pyrophosphate (PRPP) synthase 3 (.1) Lus10020768 [exp] 77 / 3e-15 AT2G42910 582 / 0.0 Phosphoribosyltransferase family protein (.1) Lus10007345 [exp] 77 / 4e-15 AT2G42910 579 / 0.0 Phosphoribosyltransferase family protein (.1) Lus10010935 [exp] 74 / 3e-14 AT2G42910 572 / 0.0 Phosphoribosyltransferase family protein (.1) Lus10031395 [exp] 74 / 5e-14 AT2G42910 578 / 0.0 Phosphoribosyltransferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G145700 [exp] 650 / 0 AT2G35390 657 / 0.0 Phosphoribosyltransferase family protein (.1.2.3) Potri.003G088400 [exp] 646 / 0 AT2G35390 655 / 0.0 Phosphoribosyltransferase family protein (.1.2.3) Potri.014G179600 [exp] 593 / 0 AT2G44530 628 / 0.0 Phosphoribosyltransferase family protein (.1.2) Potri.010G045000 [exp] 75 / 3e-14 AT1G10700 566 / 0.0 phosphoribosyl pyrophosphate (PRPP) synthase 3 (.1) Potri.005G202100 [exp] 74 / 3e-14 AT2G42910 565 / 0.0 Phosphoribosyltransferase family protein (.1) Potri.002G059700 [exp] 73 / 6e-14 AT2G42910 575 / 0.0 Phosphoribosyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0533 [flax] [poplar] PRTase-like PF00156 [flax] [poplar] Pribosyltran Phosphoribosyl transferase domain
Representative CDS sequence Show only first row Show all	>Lus10040098 pacid=23174187 polypeptide=Lus10040098 locus=Lus10040098.g ID=Lus10040098.BGIv1.0 annot-version=v1.0 ATGGCGGACATTCGAGCAGGGCGTGTCAGGTTGGCGGCTGAAGGTTCTATTCTTTCTCAGCAGAGAACTATCGTCCGTGAAATTCTCATCCACAAACTCC AAATAAATGGCGTCGCTAACTCTGCAACCTCCTTCTCAAACCGCGCTTTCTTCCCCCTCCCGCCGCCTGCCGATTCTCCACCAGCACCGCTCCAGCCTTC GCCTCAGTATTCGCGCTCAAAACACCTCCGTAAGTGCAGTCTTCCTCCATCTGCATTCACTATGCGCTTTCATGTCTTGCTTGGAGAGATTAATCTGAAA GTTTCACCATCGATTTTGAGGCTGCGGCTTCCATTTTTCCGCTGGCATCTTATGACAGTTGAAGTCTATTCTGCTATGTTCTTGCACAATATTCTGACTC GTGGCAATAAGTTTGTGATTGATTTGTCTTCTAACATTAGGGATTTGATCTCCCAGAAATTTGATGTAACTGAATCACTAGATATTGGAAATGGAAAGCC AACTGTACCGATTCTCAACGAAAGGACTCTGCCAAAGTTCTTAGATTCCGCCGCTATGGAGAAAACGGCCAGCATGCATGGTTCTAGGCTTAAATTGTTT TCTGGATCAGCAAATCCTATTCTCTCCCAAGAAATTGCTTGGTATATGGGAAAGGAACTGGGTAACATCAACATAAAGCGATTTGCAGATGGTGAAATAT ATGTCAAGCTGCAAGAGAGTGTTAGGGGCTGTGATGTCTATTTAATACAGCCTACCTCTCCTCCAGCAAATGAGAATCTCATGGAGCTTTTGGTTATGAT AGATGCTTGTCGCAGAGCGTCAGCCAAGACTATCACTGCTGTCATTCCTTACTTCGGATATGCCAGAGCTGACAGAAAGGCAAGCTTTTTAAGATTGGAA AATTGTGTTATGGTGACTCAGGGCCGTGAGTCTATTGCTGCAAAGCTTGTTGCGAATCTTCTAACGGAAGCGGGTGCTAATCGTGTTCTTGCTTGTGATC TTCACTCTGGACAATCAATGGGATACTTTGACATTCCTGTGGACCATGTGTACTGCCAGCCTGTTATCCTTGATTACCTTGCAAGCAAGACTATCAGCTC CAACGACTTGGTTGTAGTTTCACCTGATGTTGGTGGGGTTGCAAGGGCACGTGCTTTTGCAAAAAAATTGTCAGATGCACCTTTGGCAATTGTGGACAAA AGGCGTCATGGTCATAATGTTGCTGAGGTGATGAACCTCATTGGTGATGTAAAAGGGAAAGTTGCAGTTATGGTGGATGACATGATTGACACTGCTGGAA CAATTGCAAAAGGAGCAGAGCTGTTGCACCAAGAAGGAGCTAGAGAAGTGTACGCCTGCTGCACACATGCCGTCTTCAGTCCTCCTGCAATCGAGAGGCT GTCAAGTGGCCTGTTTCAAGAAGTCATCACAACCAACACAATTCCGGTAGCAGAAAAGAACTACTTCCCCCAGTTAACGATCCTCTCTGTAGCAAACCTC TTGGGGGAAACGATTTGGCGTGTGCACGACGATTGTTCCGTCAGCAGCATTTTCCAGTAA
AA sequence Show only first row Show all	>Lus10040098 pacid=23174187 polypeptide=Lus10040098 locus=Lus10040098.g ID=Lus10040098.BGIv1.0 annot-version=v1.0 MADIRAGRVRLAAEGSILSQQRTIVREILIHKLQINGVANSATSFSNRAFFPLPPPADSPPAPLQPSPQYSRSKHLRKCSLPPSAFTMRFHVLLGEINLK VSPSILRLRLPFFRWHLMTVEVYSAMFLHNILTRGNKFVIDLSSNIRDLISQKFDVTESLDIGNGKPTVPILNERTLPKFLDSAAMEKTASMHGSRLKLF SGSANPILSQEIAWYMGKELGNINIKRFADGEIYVKLQESVRGCDVYLIQPTSPPANENLMELLVMIDACRRASAKTITAVIPYFGYARADRKASFLRLE NCVMVTQGRESIAAKLVANLLTEAGANRVLACDLHSGQSMGYFDIPVDHVYCQPVILDYLASKTISSNDLVVVSPDVGGVARARAFAKKLSDAPLAIVDK RRHGHNVAEVMNLIGDVKGKVAVMVDDMIDTAGTIAKGAELLHQEGAREVYACCTHAVFSPPAIERLSSGLFQEVITTNTIPVAEKNYFPQLTILSVANL LGETIWRVHDDCSVSSIFQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G35390			Phosphoribosyltransferase fami...		Lus10040098 [exp]	0	1
AT3G16610			pentatricopeptide (PPR) repeat...		Lus10035788 [exp]	3.5	0.8592
AT4G32430			Pentatricopeptide repeat (PPR)...		Lus10017032 [exp]	8.1	0.8590
AT3G02010			Pentatricopeptide repeat (PPR)...		Lus10035164 [exp]	10.6	0.8470
AT5G67610			Uncharacterized conserved prot...		Lus10019140 [exp]	10.8	0.8469
AT4G04670			Met-10+ like family protein / ...		Lus10016343 [exp]	11.8	0.8152
AT3G58570			P-loop containing nucleoside t...		Lus10030075 [exp]	12.0	0.8146
AT5G52370			unknown protein		Lus10040713 [exp]	12.6	0.8734
AT3G57610		ADSS, ATPURA	adenylosuccinate synthase (.1)		Lus10042358 [exp]	15.5	0.8187
AT1G03530		ATNAF1	nuclear assembly factor 1 (.1)		Lus10024956 [exp]	16.1	0.8484
AT1G24265			Protein of unknown function (D...		Lus10011347 [exp]	19.9	0.8486

Compare expression of checked genes

Lus10040098 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.