Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G02040 810 / 0 NTR1, ATPTR2-B NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) AT1G62200 711 / 0 AtPTR6 peptide transporter 6, Major facilitator superfamily protein (.1) AT3G54140 666 / 0 ATPTR1 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) AT2G02020 660 / 0 AtPTR4 peptide transporter 4, Major facilitator superfamily protein (.1.2) AT5G01180 640 / 0 ATPTR5 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 5, peptide transporter 5 (.1) AT5G46050 454 / 6e-154 ATPTR3, PTR3 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, peptide transporter 3 (.1) AT1G32450 454 / 1e-153 NRT1.5 nitrate transporter 1.5 (.1) AT5G46040 451 / 2e-152 Major facilitator superfamily protein (.1) AT2G40460 451 / 2e-152 Major facilitator superfamily protein (.1) AT4G21680 421 / 6e-141 NRT1.8 NITRATE TRANSPORTER 1.8 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040099 [exp] 1046 / 0 AT2G02040 883 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Lus10030947 [exp] 1030 / 0 AT2G02040 884 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Lus10011055 [exp] 956 / 0 AT2G02040 847 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Lus10000670 [exp] 949 / 0 AT2G02040 849 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Lus10035516 [exp] 655 / 0 AT5G01180 913 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 5, peptide transporter 5 (.1) Lus10018207 [exp] 646 / 0 AT5G01180 818 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 5, peptide transporter 5 (.1) Lus10021132 [exp] 619 / 0 AT3G54140 814 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Lus10040698 [exp] 573 / 0 AT5G01180 709 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 5, peptide transporter 5 (.1) Lus10022891 [exp] 479 / 2e-163 AT5G46050 714 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, peptide transporter 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G100200 [exp] 925 / 0 AT2G02040 897 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Potri.011G120000 [exp] 845 / 0 AT2G02040 809 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Potri.016G111800 [exp] 653 / 0 AT3G54140 893 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Potri.006G096800 [exp] 651 / 0 AT3G54140 896 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Potri.016G111900 [exp] 646 / 0 AT3G54140 798 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Potri.009G042400 [exp] 641 / 0 AT3G54140 832 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Potri.001G248600 [exp] 636 / 0 AT3G54140 834 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Potri.002G258900 [exp] 495 / 1e-169 AT5G46050 730 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, peptide transporter 3 (.1) Potri.010G068100 [exp] 491 / 3e-168 AT5G46050 829 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, peptide transporter 3 (.1) Potri.008G170100 [exp] 489 / 1e-167 AT5G46050 816 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, peptide transporter 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF00854 [flax] [poplar] PTR2 POT family
Representative CDS sequence Show only first row Show all	>Lus10040100 pacid=23174173 polypeptide=Lus10040100 locus=Lus10040100.g ID=Lus10040100.BGIv1.0 annot-version=v1.0 ATGGCTTCGGCGGGGGAGCAAGCATCGCTTCTCGAACACGGTCATTCCTCTCAAAATGATCAGGTTGAGCGTAGTGGACAGCACACTGGAGATGGATCAA TCGACATCAGTGGGCAGGCTGTTCTGAAGCACAACACTGGAAATTGGAGAGCCTGCCTTTTCATCCTTGGATTGGAGTGTTGTGAACGGTTGGCCTACTA TGGGATTGCTACGAATCTTGTAACTTATCTCACCACAAACATGCACGAAGGAAATGTATCTGCTGCAAGAACTGTTACAACATGGTCCGGCACTTGCTAC ATTGCACCACTCGTTGGAGCTGTACTTGCAGATGCATATTGGGGGAGATATTGGACCATTGCTGTTTTCTCAACCATTTACTTCTTTGGGATGTGTACAT TGACCCTTTCGGCAGCATTGATGCCTTCAGACTGCGTCGGTTCTCTATGTCCTCCAGCAACTGTGCCCCAGTATGCAGTGTTCTACTTCGGTCTGTATCT GATTGCACTTGGGACAGGTGGCATCAAACCTTGTGTTTCAACTCTTGGTGCTGACCAGTTTGATGATACTAACCCCGGAGAGAAGTTGAATAAGGGTTCC TTCTTCAACTGGTTTTATTTTACCATCAACATAGGTGCCCTTATTTCAAGCACTTTAATCGTTTACATTCAAGATAATGTAGGTTGGGCTCTAGGTTTTG GCGTGCCTGCCATATTTATGGGCATTGCTATAGCAAGTTTCTTTTTTGGCACCCCGCTCTACAGATGCCAGAAACCTGGGCGAAGCCCCATTACAAGAAT GTGTCAGGTCTTGGTTGCATCTTTCTATAAGTGGAACATGGAGGTCCCTTCTGATTACACCCTCTTGTATGAAACACAAGCTGAGAGATCTATGGTTGAA GGAAGCCGTAAACTGGAGCACACTAATGAGCTCAAGTGTCTCGATAGAGCTTCTGTACTGTCAGATGCGGAGTTGAAAACCGGGGACTTCTCTAATTCCT GGAGGCTTTGTACGGTGACACAAGTTGAAGAGCTGAAAATATTGATTCGAATGTTCCCCATCTGGGCCACAGGGATCGTTTTTTCTGCAGTCTACGCCCA GATGTCGACAATGTTTGTGGAGCAGGGGATGCTAATGGATTCGACAATTGGTTCTTTCAGAATTCCTCCAGCTTCTCTATCAACAGTCGAAGTCATCAGT ATCATTATCTGGGTGCCCGTGTACGAAGCAATCATTGTTCCAATCGCCAGGAAGTTCACAGGAAATGGTAGAGGCTTCTCAGAGCTGCAACGTATGGGAA TCGGCCTTCTATTCTCAATTCTCGCCATGGCTGCAGCTGCTCTCATCGAGATCAAGCGTCTACAGCTCGCCAACGAGCTTGGACTAACCGACAAAGCTGT TCCCGTGCCACTTAGCATCTTCTGGCAAATTCCCCAGTACACGCTGGTAGGTGCTGCAGTGGTCTTCACATTCATTGGACAACTTGAGTTCTACTACGAA CAAGCTCCAGATGCAATGCGAAGCTTGTGTAGTGCGTTAGCGCTCCTGACCATCTCTCTGGGTAACTACCTAAGCTCTTTCATCCTCACCATGGTCGCTT ATTTCACCACAAAGGGTGGGAAGCCAGGATGGATTCCGGATAATTTGAACGAAGGGCATGTCGATTATTTCTTCTGGTTGTTGGCCGTGTTAAGCTTGGC GAACATGGTAGTCTATGTCTCTAGCTCGATGAAGTACAAACAGAAGAAAGCCATCTCATAG
AA sequence Show only first row Show all	>Lus10040100 pacid=23174173 polypeptide=Lus10040100 locus=Lus10040100.g ID=Lus10040100.BGIv1.0 annot-version=v1.0 MASAGEQASLLEHGHSSQNDQVERSGQHTGDGSIDISGQAVLKHNTGNWRACLFILGLECCERLAYYGIATNLVTYLTTNMHEGNVSAARTVTTWSGTCY IAPLVGAVLADAYWGRYWTIAVFSTIYFFGMCTLTLSAALMPSDCVGSLCPPATVPQYAVFYFGLYLIALGTGGIKPCVSTLGADQFDDTNPGEKLNKGS FFNWFYFTINIGALISSTLIVYIQDNVGWALGFGVPAIFMGIAIASFFFGTPLYRCQKPGRSPITRMCQVLVASFYKWNMEVPSDYTLLYETQAERSMVE GSRKLEHTNELKCLDRASVLSDAELKTGDFSNSWRLCTVTQVEELKILIRMFPIWATGIVFSAVYAQMSTMFVEQGMLMDSTIGSFRIPPASLSTVEVIS IIIWVPVYEAIIVPIARKFTGNGRGFSELQRMGIGLLFSILAMAAAALIEIKRLQLANELGLTDKAVPVPLSIFWQIPQYTLVGAAVVFTFIGQLEFYYE QAPDAMRSLCSALALLTISLGNYLSSFILTMVAYFTTKGGKPGWIPDNLNEGHVDYFFWLLAVLSLANMVVYVSSSMKYKQKKAIS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G02040		NTR1, ATPTR2-B	NITRATE TRANSPORTER 1, ARABIDO...		Lus10040100 [exp]	0	1
AT2G29620			unknown protein		Lus10001202 [exp]	8.4	0.5967
AT4G11070	WRKY	ATWRKY41, WRKY4...	WRKY family transcription fact...		Lus10003894 [exp]	9.4	0.7185
					Lus10027784 [exp]	13.6	0.6978
AT1G04945			HIT-type Zinc finger family pr...		Lus10008703 [exp]	15.7	0.6991
AT5G14710			unknown protein		Lus10014543 [exp]	23.5	0.6911
AT5G23210		SCPL34	serine carboxypeptidase-like 3...		Lus10017392 [exp]	28.5	0.6608
					Lus10006537 [exp]	37.5	0.6070
AT3G44010			Ribosomal protein S14p/S29e fa...		Lus10039155 [exp]	38.1	0.6881
AT3G46530		RPP13	RECOGNITION OF PERONOSPORA PAR...		Lus10025626 [exp]	40.4	0.6797
AT1G31660			unknown protein		Lus10027134 [exp]	69.3	0.6322

Compare expression of checked genes

Lus10040100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.