Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G32450 854 / 0 NRT1.5 nitrate transporter 1.5 (.1) AT4G21680 728 / 0 NRT1.8 NITRATE TRANSPORTER 1.8 (.1) AT5G19640 611 / 0 Major facilitator superfamily protein (.1) AT3G54140 464 / 4e-157 ATPTR1 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) AT2G02040 455 / 3e-153 NTR1, ATPTR2-B NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) AT1G62200 439 / 7e-147 AtPTR6 peptide transporter 6, Major facilitator superfamily protein (.1) AT5G01180 414 / 1e-137 ATPTR5 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 5, peptide transporter 5 (.1) AT2G02020 387 / 3e-127 AtPTR4 peptide transporter 4, Major facilitator superfamily protein (.1.2) AT2G26690 352 / 2e-113 Major facilitator superfamily protein (.1) AT5G46050 342 / 2e-109 ATPTR3, PTR3 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, peptide transporter 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030945 [exp] 1129 / 0 AT1G32450 920 / 0.0 nitrate transporter 1.5 (.1) Lus10000673 [exp] 927 / 0 AT1G32450 931 / 0.0 nitrate transporter 1.5 (.1) Lus10011058 [exp] 914 / 0 AT1G32450 926 / 0.0 nitrate transporter 1.5 (.1) Lus10013736 [exp] 607 / 0 AT5G19640 728 / 0.0 Major facilitator superfamily protein (.1) Lus10039204 [exp] 597 / 0 AT5G19640 727 / 0.0 Major facilitator superfamily protein (.1) Lus10030287 [exp] 485 / 9e-165 AT1G32450 542 / 0.0 nitrate transporter 1.5 (.1) Lus10040099 [exp] 468 / 2e-158 AT2G02040 883 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Lus10030947 [exp] 467 / 1e-157 AT2G02040 884 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Lus10011055 [exp] 464 / 6e-157 AT2G02040 847 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G145200 [exp] 925 / 0 AT1G32450 949 / 0.0 nitrate transporter 1.5 (.1) Potri.003G088800 [exp] 923 / 0 AT1G32450 979 / 0.0 nitrate transporter 1.5 (.1) Potri.014G179400 [exp] 816 / 0 AT1G32450 791 / 0.0 nitrate transporter 1.5 (.1) Potri.001G013400 [exp] 642 / 0 AT5G19640 754 / 0.0 Major facilitator superfamily protein (.1) Potri.003G212900 [exp] 638 / 0 AT5G19640 750 / 0.0 Major facilitator superfamily protein (.1) Potri.010G100200 [exp] 474 / 1e-160 AT2G02040 897 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Potri.016G111800 [exp] 458 / 7e-155 AT3G54140 893 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Potri.001G248600 [exp] 456 / 1e-153 AT3G54140 834 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Potri.006G096800 [exp] 451 / 4e-152 AT3G54140 896 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Potri.009G042400 [exp] 446 / 7e-150 AT3G54140 832 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF00854 [flax] [poplar] PTR2 POT family
Representative CDS sequence Show only first row Show all	>Lus10040102 pacid=23173945 polypeptide=Lus10040102 locus=Lus10040102.g ID=Lus10040102.BGIv1.0 annot-version=v1.0 ATGGCTGCTGCTAACTGCATCAGAGAGCTAGTTATCTGCAACAACAACAACAACAACGAGGAGGAGGAGAAGAAGGTGGTGGTGATGGAGATGGATAAAC GACAACAAGAAGAAGAAGAAGATAGTGATCACGACGAGGATTACAGCAGCAGCAGTTGCGGAAGTAACAGTACAACAACAATGGACGGAACAGTGGACTG GAAAGGAAGACCAGCTTTCAAATCCAAATCTGGAAATTGGACTGCTGCTATCATCATCCTTGTGAACCAAGGACTGGCGACATTAGCATTCTTTGGCGTA GGAGTGAACTTAGTCCTGTTCCTGACCAGAGTTCTGCAGCAGAACAATGCTGATGCTGCTAACAATGTCAGCAAATGGACTGGAACTGTCTACATATTCT CCCTTGTTGGTGCTTTTCTTAGTGACTCTTACTGGGGAAGATACAAGACTTGTGCCATCTTCCAAGGCATCTTTGTCATGGGTTTGGTCCTTTTGTCACT ATCATCGTACCTCTTCCTCATCAAACCAAAAGGCTGCGGTGACATAGACACACCTTGTGCCTCACACACAAACACAGAAGTCGGGCTGTTCTACCTATCG ATCTACCTCATTGCGCTTGGCAACGGAGGGTACCAACCGAACATTGCCACGTTCGGGGCAGACCAGTTCGATGAGGAGGACCCTGTGGAAGGAATCACTA AAGTCGCATTCTTTAGCTACTTCTACTTGGCCCTAAACCTCGGCTCACTCTTCTCAAACACCATACTGGGTTACTTCGAGGACGAAGGCATGTGGGCCCT CGGGTTCTGGGCATCAGCCGGCTCTGCCTTTGCAGCATTGGCCTTGTTTCTGGCCGGTTCGAGTAGGTACCGACACTTCAAGCCCACCGGAAACCCTCTC TCTAGATTCTGTCAGGTTATCGTTGCGTCCATCAAGAAGTGCAGCCATCAACTGTCGTCGAATGGTGATGATCTGTATGATGTTGGTAGCAAAGATTGCT CTGGAAATGGGAGCAGGAAGATTCTCCACACTCATGGATTCAAGTTCCTGGACAGAGCAGCTTACATAACATCAAGAGATATCGACAACCAAAAGAAAGG GTTTCGAAACCCATGGCAGCTCTGCCCCATCACACAAGTAGAAGAAGTGAAATGCATACTGAGACTCTTACCCATATGGCTATGCACAATCATTTACTCA GTAGTATTCACACAAATGGCTTCTCTGTTCGTGGAGCAAGGAGCCGCAATGCAAACCACAATCTCAGGGTTCCGAATCCCGCCAGCAAGCATGTCGAGCT TCGACATCCTAAGCGTAGCCCTCTTCATCTTCCTCTACAGGAGAGTCCTCGACCCATTCGTCGCAACGATCAAGAGAAATAAATTATGCAGCACCAGCAC CACCAGGGGATTCACTGAGCTGCAGAGGATGGGGGTGGGGCTAGTGATAGCCGTAATGGCAATGGTCACAGCAGGGATCGTCGAATCCTACAGGCTGAAA AACGCGAGAAAGGACTGCTCGCATTGCGAAGGATCGAGCTCCTTGAGCATACTTTGGCAGATACCGCAGTATGCGCTGATAGGAGCTTCGGAGGTGTTCA TGTACGTAGGGCAGCTCGAGTTCTTCAACGCGCAGGCTCCCGACGGGTTGAAGAGCTTCGGGAGCGCGCTGTGCATGACTTCAATCTCGTTGGGGAACTA TGTTAGTAGCCTCTTGGTGACTATGGTGATGAAGATCTCTACTGAGGATCACATGCCTGGATGGATCCCTGGGAATCTGAACAAAGGTCACTTGGATAGG TTCTACTTCTTGTTGGCTGTGTTGACTTCGGTTGACTTGGGTGTGTACATTGTTTGTGCTAAATGGTACAAAGGGATTCAGCTCGAATCAAAATTTGACA GCAACAACTCGGAGGAGTATGATGATGAAGCGGATGTCGACGAAAAATGTCAAGTCTAA
AA sequence Show only first row Show all	>Lus10040102 pacid=23173945 polypeptide=Lus10040102 locus=Lus10040102.g ID=Lus10040102.BGIv1.0 annot-version=v1.0 MAAANCIRELVICNNNNNNEEEEKKVVVMEMDKRQQEEEEDSDHDEDYSSSSCGSNSTTTMDGTVDWKGRPAFKSKSGNWTAAIIILVNQGLATLAFFGV GVNLVLFLTRVLQQNNADAANNVSKWTGTVYIFSLVGAFLSDSYWGRYKTCAIFQGIFVMGLVLLSLSSYLFLIKPKGCGDIDTPCASHTNTEVGLFYLS IYLIALGNGGYQPNIATFGADQFDEEDPVEGITKVAFFSYFYLALNLGSLFSNTILGYFEDEGMWALGFWASAGSAFAALALFLAGSSRYRHFKPTGNPL SRFCQVIVASIKKCSHQLSSNGDDLYDVGSKDCSGNGSRKILHTHGFKFLDRAAYITSRDIDNQKKGFRNPWQLCPITQVEEVKCILRLLPIWLCTIIYS VVFTQMASLFVEQGAAMQTTISGFRIPPASMSSFDILSVALFIFLYRRVLDPFVATIKRNKLCSTSTTRGFTELQRMGVGLVIAVMAMVTAGIVESYRLK NARKDCSHCEGSSSLSILWQIPQYALIGASEVFMYVGQLEFFNAQAPDGLKSFGSALCMTSISLGNYVSSLLVTMVMKISTEDHMPGWIPGNLNKGHLDR FYFLLAVLTSVDLGVYIVCAKWYKGIQLESKFDSNNSEEYDDEADVDEKCQV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G32450		NRT1.5	nitrate transporter 1.5 (.1)		Lus10040102 [exp]	0	1
AT4G18700		ATWL4, CIPK12, ...	SNF1-RELATED PROTEIN KINASE 3....		Lus10015275 [exp]	4.6	0.8580
AT1G68570			Major facilitator superfamily ...		Lus10041466 [exp]	6.2	0.8534
AT2G18030			Peptide methionine sulfoxide r...		Lus10041922 [exp]	8.4	0.8367
AT1G67410			Exostosin family protein (.1)		Lus10015791 [exp]	9.3	0.8488
AT2G26690			Major facilitator superfamily ...		Lus10039782 [exp]	10.4	0.8423
AT3G22550			Protein of unknown function (D...		Lus10006102 [exp]	18.7	0.7938
AT3G18750		ZIK5, WNK6, ATW...	ARABIDOPSIS THALIANA WITH NO K...		Lus10030229 [exp]	20.3	0.8037
AT5G15900		TBL19	TRICHOME BIREFRINGENCE-LIKE 19...		Lus10003061 [exp]	21.2	0.8170
AT1G64090		RTNLB3	Reticulan like protein B3 (.1....		Lus10017533 [exp]	22.4	0.7989
AT2G01620		MEE11	maternal effect embryo arrest ...		Lus10013466 [exp]	24.4	0.8259

Compare expression of checked genes

Lus10040102 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.