Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G18010 617 / 0 AT5PTASE2, IP5PII INOSITOL\(1,4,5\)P3 5-PHOSPHATASE II, myo-inositol polyphosphate 5-phosphatase 2 (.1.2) AT2G35380 375 / 9e-123 Peroxidase superfamily protein (.1.2) AT1G34120 355 / 8e-112 AT5PTASE1, ATIP5PI, AT5P1, IP5PI MYO-INOSITOL POLYPHOSPHATE 5-PHOSPHATASE 1, inositol polyphosphate 5-phosphatase I (.1.2.3) AT5G06720 308 / 4e-97 ATPA2 peroxidase 2 (.1) AT1G44970 308 / 4e-97 Peroxidase superfamily protein (.1) AT2G18150 303 / 2e-95 Peroxidase superfamily protein (.1) AT5G66390 301 / 2e-94 Peroxidase superfamily protein (.1) AT4G16270 300 / 4e-94 Peroxidase superfamily protein (.1) AT3G49110 298 / 3e-93 PRX33, PRXCA, ATPRX33, ATPCA PEROXIDASE 33, peroxidase CA (.1) AT4G36430 297 / 3e-93 Peroxidase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003010 [exp] 759 / 0 AT4G18010 655 / 0.0 INOSITOL\(1,4,5\)P3 5-PHOSPHATASE II, myo-inositol polyphosphate 5-phosphatase 2 (.1.2) Lus10011041 [exp] 739 / 0 AT4G18010 655 / 0.0 INOSITOL\(1,4,5\)P3 5-PHOSPHATASE II, myo-inositol polyphosphate 5-phosphatase 2 (.1.2) Lus10028727 [exp] 406 / 3e-130 AT1G71710 674 / 0.0 DNAse I-like superfamily protein (.1.2) Lus10028697 [exp] 399 / 1e-127 AT1G71710 675 / 0.0 DNAse I-like superfamily protein (.1.2) Lus10041784 [exp] 316 / 2e-100 AT5G66390 519 / 0.0 Peroxidase superfamily protein (.1) Lus10010634 [exp] 308 / 4e-97 AT1G44970 449 / 5e-159 Peroxidase superfamily protein (.1) Lus10017069 [exp] 293 / 2e-91 AT4G16270 392 / 3e-136 Peroxidase superfamily protein (.1) Lus10027984 [exp] 289 / 7e-90 AT5G06730 402 / 2e-140 Peroxidase superfamily protein (.1) Lus10027989 [exp] 288 / 3e-89 AT5G06720 400 / 1e-139 peroxidase 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G145900 [exp] 741 / 0 AT4G18010 615 / 0.0 INOSITOL\(1,4,5\)P3 5-PHOSPHATASE II, myo-inositol polyphosphate 5-phosphatase 2 (.1.2) Potri.001G145800 [exp] 418 / 2e-139 AT2G35380 458 / 6e-163 Peroxidase superfamily protein (.1.2) Potri.003G088300 [exp] 418 / 3e-135 AT4G18010 615 / 0.0 INOSITOL\(1,4,5\)P3 5-PHOSPHATASE II, myo-inositol polyphosphate 5-phosphatase 2 (.1.2) Potri.008G155700 [exp] 336 / 1e-104 AT2G32010 914 / 0.0 CVP2 like 1 (.1.2) Potri.007G019300 [exp] 317 / 8e-101 AT5G66390 507 / 0.0 Peroxidase superfamily protein (.1) Potri.005G118700 [exp] 313 / 3e-99 AT5G66390 504 / 0.0 Peroxidase superfamily protein (.1) Potri.008G103200 [exp] 305 / 6e-96 AT4G16270 438 / 1e-154 Peroxidase superfamily protein (.1) Potri.016G132800 [exp] 295 / 1e-92 AT5G05340 336 / 3e-115 Peroxidase superfamily protein (.1) Potri.014G143200 [exp] 293 / 4e-92 AT5G05340 404 / 5e-142 Peroxidase superfamily protein (.1) Potri.001G011000 [exp] 293 / 1e-91 AT3G49120 407 / 1e-142 PEROXIDASE 34, ARABIDOPSIS THALIANA PEROXIDASE CB, peroxidase CB (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0617 [flax] [poplar] Peroxidase PF00141 [flax] [poplar] peroxidase Peroxidase CL0530 [flax] [poplar] DNase_I-like PF03372 [flax] [poplar] Exo_endo_phos Endonuclease/Exonuclease/phosphatase family
Representative CDS sequence Show only first row Show all	>Lus10040107 pacid=23173832 polypeptide=Lus10040107 locus=Lus10040107.g ID=Lus10040107.BGIv1.0 annot-version=v1.0 ATGAGGGCCAGGAGAGCTAAGCGTTCTGAGGCATTTTGGCCTTCACTTGTGATGAAGAAATGGCTTAACATTAAACCCCAGGTGCATGATTTCAGCGAAG ATGAACTCACTGAGAACGAGAGTGAAGATGATGCTTGCTCTGTTAGAGATGAGAGAGTAAATGTGAGAGAGGATCATGGTCAAATGAAGCATTATCAGTC CCACCAAAGCCCACCATCTAAAGGCTATTCACTGAAACACAGGAGGGGGAAATCTGAAACTCTGCGTATTCAGTACATAAATACTAAGGATGTGAGGGTC ACAATAGGGACTTGGAACGTTGCTGGTAAAACCCCAGATGATGATCTTGAAATTGAGAGTTGGCTTTGCACTGAAGAGCCAGCAGACGTGTACATTATTG GGTTTCAGGAAGTGGTCCCTCTGAGTGCTGGGAATGTACTTGGTGCTGAAAGCAACAGACCGATTTCAAAGTGGGAGGGAATCATTAGAAAAACACTGAA CAAGTCTTCACAGCCTGCTAAGAAACACAAATGTTTCAGTGCCCCACCTTCTCCAGTCTTGAGGACTTCTTCAGTTGCTGACGATCTTGCAGATGAAGTA CACGATGCTTTGCCACTAGATTTGACAAACGAAGAGTACCTAGAACCTATGGATAATAATCGCGAACCTGAGGGGAATGAGCCAAGGAGGGAAGTCGGTA TTGGGAAAGACTTACACCTCAAGACAATCTTTGGAATGGACTGTGAGAATAAACTAGACTGGCCTGAGCACTCCTTAGATGCAGCTCCACAGGTCATTTC ATCAGGTTCCAAGCTGAGGAGGGTATTTTCAGCTAGAATGAGCTCTAGTTGGGAAAACAGCCTTGGCAGTACCCCAAGTTTTGCAGCAAACCCTTGTGGA CTCAGGAGAACTCACCACAGTTCTGGTGACCTTGGATCGCTGTTGGTAGATCAGCCAAAAGAAATCGTATCGGTTTGGGTGCGCAAGGGGGTGAGGAGAC ATGTAAACAACTTGAAGGTCTCTCCTGTTGGAGTTGGTCTAATGGGATACATGGGAAACAAGGGATCTGTTTCTGTTAGCATGTCGATTTTCCAGTCGAG GATGTGCTTCGTTTGCTCCCATCTCACGTCAGGTCAGAAGGAGGGCCAAGAACAAAGGCGAAATGCTGACGTCTACGAAATTTTAAAGCGTACTCGTTTT TCGTCAATCCTTGACACGGATCAGCCTCAGACGATCCCATCTCACGATCAAATATTCTGGTTTGGCGACTTGAACTATCGACTCAATAAGTCAGATTCAG AAGTGAGGAAGCTTGTTTCTCTCAAGCAATGGAATGAACTTACCAACAGTGATCAGCTAATTAGAGAACTTCGAAGCGGGCACGTATTCGATGGATGGAG AGAGGGAGCCATACACTTCCCTCCTACTTATAAGTATGAGATAAACTCAGATAGATATGTAGGAGAGTTCCCAAGAGAAGGAGAGAAGAAAAGATCTCCA GCATGGTGTGACAGAATTCTTTGGTTAGGTAAAGGCATAAAGCAACTCTTCTACAAAAGAGCAGATATCAGAATATCAGATCATCGTCCAGTGAGCTCAA TGTTCGTAGTTGAAGTCGAAGTCTTTGATCATCGAAAACTGAAGAAGGCACTCAACGTGAATAGTGCAGCAGTCCATCCTGACATTTTCCTGTTTGATGA TGAAGAACCTGAAACTTCGCAGATTACGCAACGCATAATCATGGCTTGTTCGATTTGCCAAGGACAGAATCTGGTACAACACTACTACAAGGGAACATGC CCTTCAGCAGAAGCTATTGTTAGGTACAATGTTGAGGATGCTGTAATCAAGCATCCTCGAATCGCGGCTTCCCTAATCCGCCTCCATTTTCATGACTGCT TTGTCATGGGTTGTGATGGATCTTTGCTCCTGGATAGAAAAGGGGGAATGCAGAGTGAGAAGGATGCGAAACCAAACGCAAACTCGGTGCATGGATTTGA GTTGGTTGATAAGATAAAGAGTGAAGTGGAACAAGCTTGCCCTTCTACTGTCTCTTGTGCCGATATATTGGCCATTGCTGCTCGCGATGCTGTTGCTTTG AGAGGAGGGAAGGGATGGGAAGTGATGCTGGGGAGAAAGGACTCACTGAATGCAAGCATTGATGCTGCCAATGACTTGTTGCCTTCTCCCAATTCTACCG TTAAGGAACTTGTAGATAACTTCAAGCAACAGGGTCTTGACATCAAAGATTTGGTTGCTTTATCAGGTGCACATACGTTGGGGAAGGCAAGATGCTCGAG CATCAACGGAAGGATCCATGATCTCTTTGAATCGAGGAAGAACGACGAGTACGAGAGGCACACTACATTCTTAAAAATCCTAAGGTCAACATGCCTAGGA AATCAACGCCAACTAGCTCCCCTTGATTTACAGACACCTTTCAGATTCGACAACAAGTACTATCTCAACATCCTCCAAGGCAGAGGCTTGTTGGGCTCCG ACGATGTCCTAGTCTCCGAAAGAAACACCACGGTCATGAGCTTGGTATGGGCGTATGCGTCGAACGAGGAGCTCTTCTTTCGAGATTTCGCAAAGTCAAT GATCGAGATGGGAAACATCAATGTGCTCACCGGTAATCAAGGTGAAATCCGGAAGAATTGTAGGGTTGTTAACTCTTCATAG
AA sequence Show only first row Show all	>Lus10040107 pacid=23173832 polypeptide=Lus10040107 locus=Lus10040107.g ID=Lus10040107.BGIv1.0 annot-version=v1.0 MRARRAKRSEAFWPSLVMKKWLNIKPQVHDFSEDELTENESEDDACSVRDERVNVREDHGQMKHYQSHQSPPSKGYSLKHRRGKSETLRIQYINTKDVRV TIGTWNVAGKTPDDDLEIESWLCTEEPADVYIIGFQEVVPLSAGNVLGAESNRPISKWEGIIRKTLNKSSQPAKKHKCFSAPPSPVLRTSSVADDLADEV HDALPLDLTNEEYLEPMDNNREPEGNEPRREVGIGKDLHLKTIFGMDCENKLDWPEHSLDAAPQVISSGSKLRRVFSARMSSSWENSLGSTPSFAANPCG LRRTHHSSGDLGSLLVDQPKEIVSVWVRKGVRRHVNNLKVSPVGVGLMGYMGNKGSVSVSMSIFQSRMCFVCSHLTSGQKEGQEQRRNADVYEILKRTRF SSILDTDQPQTIPSHDQIFWFGDLNYRLNKSDSEVRKLVSLKQWNELTNSDQLIRELRSGHVFDGWREGAIHFPPTYKYEINSDRYVGEFPREGEKKRSP AWCDRILWLGKGIKQLFYKRADIRISDHRPVSSMFVVEVEVFDHRKLKKALNVNSAAVHPDIFLFDDEEPETSQITQRIIMACSICQGQNLVQHYYKGTC PSAEAIVRYNVEDAVIKHPRIAASLIRLHFHDCFVMGCDGSLLLDRKGGMQSEKDAKPNANSVHGFELVDKIKSEVEQACPSTVSCADILAIAARDAVAL RGGKGWEVMLGRKDSLNASIDAANDLLPSPNSTVKELVDNFKQQGLDIKDLVALSGAHTLGKARCSSINGRIHDLFESRKNDEYERHTTFLKILRSTCLG NQRQLAPLDLQTPFRFDNKYYLNILQGRGLLGSDDVLVSERNTTVMSLVWAYASNEELFFRDFAKSMIEMGNINVLTGNQGEIRKNCRVVNSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G18010		AT5PTASE2, IP5P...	INOSITOL\(1,4,5\)P3 5-PHOSPHAT...		Lus10040107 [exp]	0	1
AT4G00750			S-adenosyl-L-methionine-depend...		Lus10036563 [exp]	4.2	0.8917
AT4G08480		MEKK2, MAPKKK9	MAPK/ERK KINASE KINASE 2, mito...		Lus10029657 [exp]	10.8	0.9031
AT1G66340		AtETR1, EIN1, E...	ETHYLENE RESPONSE 1, ETHYLENE ...		Lus10031382 [exp]	11.8	0.8910
					Lus10033269 [exp]	13.9	0.9049
AT5G46550			DNA-binding bromodomain-contai...		Lus10002784 [exp]	19.1	0.8938
AT3G46540			ENTH/VHS family protein (.1)		Lus10040824 [exp]	26.8	0.8892
AT3G12250	bZIP	BZIP45, TGA6	TGACG motif-binding factor 6 (...		Lus10024140 [exp]	28.9	0.8922
AT4G00755			F-box family protein (.1.2)		Lus10015001 [exp]	33.9	0.8921
AT5G18150			Methyltransferase-related prot...		Lus10020287 [exp]	40.6	0.8862
AT5G48630			Cyclin family protein (.1.2)		Lus10003151 [exp]	42.3	0.8885

Compare expression of checked genes

Lus10040107 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.