Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G32400 191 / 6e-61 TOM2A tobamovirus multiplication 2A (.1.2.3) AT4G28770 40 / 0.0004 Tetraspanin family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030939 [exp] 271 / 1e-92 AT1G32400 364 / 1e-127 tobamovirus multiplication 2A (.1.2.3) Lus10011042 [exp] 251 / 2e-84 AT1G32400 378 / 4e-133 tobamovirus multiplication 2A (.1.2.3) Lus10003011 [exp] 186 / 3e-59 AT1G32400 311 / 2e-107 tobamovirus multiplication 2A (.1.2.3) Lus10018584 [exp] 40 / 0.0004 AT2G20740 243 / 8e-82 Tetraspanin family protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G146100 [exp] 207 / 5e-67 AT1G32400 329 / 8e-114 tobamovirus multiplication 2A (.1.2.3) Potri.003G087800 [exp] 206 / 6e-67 AT1G32400 319 / 7e-110 tobamovirus multiplication 2A (.1.2.3) Potri.002G253500 [exp] 39 / 0.0008 AT2G20230 255 / 5e-85 Tetraspanin family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0347 [flax] [poplar] Tetraspannin PF00335 [flax] [poplar] Tetraspanin Tetraspanin family
Representative CDS sequence Show only first row Show all	>Lus10040108 pacid=23174185 polypeptide=Lus10040108 locus=Lus10040108.g ID=Lus10040108.BGIv1.0 annot-version=v1.0 ATGGTTGGCTATGGGATCTATCTGTTTCTCGAGTATAAGCATGCGACAGACGATTTGCTAATGCCACCTTCCAGTGATCATGACAGTTTAATACAGCTGG GCCGCCCTATGCTTATCGCTGTGTCCCTTACTGAGAGTATCTTTGATAAGTTGCCGAAACCTTGGTTCATATACTTATTTTTTGGAGTTGGAGTGATCTT CTTTGTTGTCTCTTGTTTTGGCTGTATTGGAGCTACGACCAGGAATGGTTGCTGCCTAAGTTGTGAACTTCCAGTTGACAAGACTGGAAATTTTGACATG ATATATGGCTTCCTGAAGGAGAACTGGAAAATAGTCAAGTGGGTTGCGCTTGGGTTAGTTGTCTTTGAGGCTTTGATTTTCTTGTTGGCCCTAGCGCCGC CTCCTGCAATAGGCGTCCCTGCTGCAGGAACCCTTGATCAGCGTCCAAGCAGAAATGATGCTTGGAGTACACGTATGAGGGAAAAGTATGGGCTTGATAC TGCTGAGTTCACATACAACCCGTCGGAGTCACATAGGTACCAGCAGGTATCACCTCAGCCCACCGAAGAAGGAAGCCGGTGCACAATCATGTGA
AA sequence Show only first row Show all	>Lus10040108 pacid=23174185 polypeptide=Lus10040108 locus=Lus10040108.g ID=Lus10040108.BGIv1.0 annot-version=v1.0 MVGYGIYLFLEYKHATDDLLMPPSSDHDSLIQLGRPMLIAVSLTESIFDKLPKPWFIYLFFGVGVIFFVVSCFGCIGATTRNGCCLSCELPVDKTGNFDM IYGFLKENWKIVKWVALGLVVFEALIFLLALAPPPAIGVPAAGTLDQRPSRNDAWSTRMREKYGLDTAEFTYNPSESHRYQQVSPQPTEEGSRCTIM

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G32400		TOM2A	tobamovirus multiplication 2A ...		Lus10040108 [exp]	0	1
AT3G57170			N-acetylglucosaminyl transfera...		Lus10003248 [exp]	1.0	0.9494
AT1G15520		ATABCG40, ABCG4...	Arabidopsis thaliana ATP-bindi...		Lus10022663 [exp]	2.0	0.9034
AT3G43790		ZIFL2	zinc induced facilitator-like ...		Lus10041286 [exp]	2.6	0.8299
AT1G19715			Mannose-binding lectin superfa...		Lus10024291 [exp]	4.5	0.8482
					Lus10007992 [exp]	4.6	0.8562
AT5G10010			unknown protein		Lus10006744 [exp]	4.9	0.8215
AT1G68800	TCP	TCP12, BRC2, TC...	BRANCHED 2, TCP domain protein...		Lus10032465 [exp]	5.0	0.8307
AT3G62950			Thioredoxin superfamily protei...		Lus10040898 [exp]	6.6	0.8177
					Lus10034884 [exp]	7.9	0.8197
AT3G05327			Cyclin family protein (.1)		Lus10004475 [exp]	8.4	0.7971

Compare expression of checked genes

Lus10040108 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.