Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G17020 332 / 1e-112 ATSRG1, SRG1 senescence-related gene 1 (.1) AT4G25300 317 / 6e-107 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) AT1G78550 313 / 2e-105 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT4G25310 306 / 1e-102 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G17010 304 / 1e-101 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT3G21420 300 / 4e-100 LBO1 LATERAL BRANCHING OXIDOREDUCTASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT3G11180 239 / 5e-76 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) AT5G05600 235 / 1e-74 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT2G38240 232 / 1e-73 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT3G55970 230 / 9e-73 ATJRG21 jasmonate-regulated gene 21 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030934 [exp] 702 / 0 AT1G17020 337 / 2e-114 senescence-related gene 1 (.1) Lus10030995 [exp] 573 / 0 AT1G17020 339 / 2e-115 senescence-related gene 1 (.1) Lus10030941 [exp] 458 / 4e-163 AT1G17010 258 / 2e-84 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10022292 [exp] 342 / 2e-116 AT1G17020 449 / 5e-159 senescence-related gene 1 (.1) Lus10026173 [exp] 315 / 8e-106 AT1G17020 443 / 5e-156 senescence-related gene 1 (.1) Lus10011985 [exp] 313 / 8e-105 AT1G17020 367 / 4e-126 senescence-related gene 1 (.1) Lus10032574 [exp] 311 / 6e-104 AT4G25300 419 / 2e-146 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Lus10011980 [exp] 298 / 2e-99 AT1G17020 382 / 1e-132 senescence-related gene 1 (.1) Lus10015252 [exp] 293 / 4e-97 AT1G17020 375 / 1e-129 senescence-related gene 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G382400 [exp] 353 / 6e-121 AT1G17020 446 / 1e-157 senescence-related gene 1 (.1) Potri.001G381700 [exp] 328 / 6e-111 AT1G17020 436 / 2e-153 senescence-related gene 1 (.1) Potri.001G355100 [exp] 318 / 3e-107 AT1G17020 439 / 1e-154 senescence-related gene 1 (.1) Potri.009G025900 [exp] 318 / 5e-107 AT4G25300 410 / 3e-143 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Potri.009G022800 [exp] 295 / 2e-98 AT1G17020 302 / 6e-101 senescence-related gene 1 (.1) Potri.010G201000 [exp] 283 / 4e-93 AT3G21420 290 / 5e-96 LATERAL BRANCHING OXIDOREDUCTASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.010G023600 [exp] 273 / 3e-89 AT3G21420 511 / 0.0 LATERAL BRANCHING OXIDOREDUCTASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.001G355200 [exp] 267 / 3e-87 AT1G17020 329 / 3e-111 senescence-related gene 1 (.1) Potri.010G200900 [exp] 263 / 2e-85 AT3G21420 288 / 4e-95 LATERAL BRANCHING OXIDOREDUCTASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.006G101200 [exp] 258 / 8e-84 AT5G05600 474 / 3e-168 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF03171 [flax] [poplar] 2OG-FeII_Oxy 2OG-Fe(II) oxygenase superfamily
Representative CDS sequence Show only first row Show all	>Lus10040112 pacid=23174129 polypeptide=Lus10040112 locus=Lus10040112.g ID=Lus10040112.BGIv1.0 annot-version=v1.0 ATGGCGACCAAGAAGCTAACATTTGATTTCGGAGGCTCGATTGCTGTCACCAATGTCCAACAACTTGCTTCAATCTCCGACGTCGACGTACCCATCAGAT ACATCCGCCCTGAACTCGAGCTTGATCAAGTTTGCATTAACAATGACGGGTCTCACCAGATCCCGGTAATCGACATGACCAAGCTAGATTCTGCTGATGA AGAAGAATCCGCAAAGCTCCATGCCGCTTGCAGGGACTGGGGATTCTTCCAGGTGATCAACCAAGGCGTCACACAAGAATTGATACAGAAGATGCACCTG GATGTCCAGGAGTTCTTCAACCAGCCGTTGCAAGAAAAGATGTCGTGTGCCCAGTTGCCAAACAGCGTCGAAGGATACGGCCAGGCGTTCGTGGTATCGG AAGAACAGAAGCTTGATTGGGGTGACATGCTCTTGATAATTTCCCAGCCTGTTAGTGGAAGAAGCATGAGATTTTGGCCCACAGTTCCCTCTTCTTTCAG GGCCAGTTTGGAACAGTATTCGTCAGAGCTGCAAAAACTGGCGTCGAGTCTAATGACTTGCATGGCAAGGAACTTAGGAGTTGAGCCAGAGAAGCTGCTG GCTTTGTTCGAAGAAGGAGTACAAGGTGTAAGAATGAACTACTACCCTCCTTGTAAGGAGGCAAACAAAGTTATGGGTCTCGCACCGCATTCTGACACTA CTGGGTTGACATTGCTGACTCAAGTCAACGATGTTCAAGGGCTTCAGATCAGGAGAGATGAGAAATGGGTTCCTGTTGTTCCGATTCCTGGTGCATTCAT CGTCAATGTTGGCGACATCATTGAGATAATGAGCAACGGGGAGTACAAAAGCATAGAGCACAGAGCAGTTGTGAACCCTGATAAGGAGAGGATGTCAATT GCAGCGTTCCACAGTCCAAATATGCAGGCCATGATTGAGCCTTTTGAAGAGACCATATTGAAGGAAGAAATGAAGCAAGCCAAGTACAAGGCGATATCGC AAGATGAGTTAATGAAGATTATCGTGACCAGCAAGCTCGATGGAAAATCACTCCTTTCTCGGCTGAAGATCGCACAAGACTAA
AA sequence Show only first row Show all	>Lus10040112 pacid=23174129 polypeptide=Lus10040112 locus=Lus10040112.g ID=Lus10040112.BGIv1.0 annot-version=v1.0 MATKKLTFDFGGSIAVTNVQQLASISDVDVPIRYIRPELELDQVCINNDGSHQIPVIDMTKLDSADEEESAKLHAACRDWGFFQVINQGVTQELIQKMHL DVQEFFNQPLQEKMSCAQLPNSVEGYGQAFVVSEEQKLDWGDMLLIISQPVSGRSMRFWPTVPSSFRASLEQYSSELQKLASSLMTCMARNLGVEPEKLL ALFEEGVQGVRMNYYPPCKEANKVMGLAPHSDTTGLTLLTQVNDVQGLQIRRDEKWVPVVPIPGAFIVNVGDIIEIMSNGEYKSIEHRAVVNPDKERMSI AAFHSPNMQAMIEPFEETILKEEMKQAKYKAISQDELMKIIVTSKLDGKSLLSRLKIAQD

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G17020		ATSRG1, SRG1	senescence-related gene 1 (.1)		Lus10040112 [exp]	0	1
					Lus10013980 [exp]	4.6	0.7074
AT5G10695			unknown protein		Lus10026229 [exp]	12.2	0.6559
AT3G12750		ZIP1	zinc transporter 1 precursor (...		Lus10041647 [exp]	24.2	0.5912
AT1G01310			CAP (Cysteine-rich secretory p...		Lus10015044 [exp]	105.8	0.4944
AT3G60630	GRAS	ATHAM2, LOM2	LOST MERISTEMS 2, ARABIDOPSIS ...		Lus10002205 [exp]	187.7	0.4693
AT3G12130	C3HZnF		KH domain-containing protein /...		Lus10012016 [exp]	202.0	0.4664
AT2G40340	AP2_ERF	AtERF48, DREB2C	Integrase-type DNA-binding sup...		Lus10034902 [exp]	227.1	0.4648

Compare expression of checked genes

Lus10040112 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.