Plant FIBer expression Database

Lus10040113 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G67370 608 / 0 ASY1, ATASY1 ASYNAPTIC 1, DNA-binding HORMA family protein (.1)
AT4G32200 225 / 3e-63 ASY2 DNA-binding HORMA family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10030933
[exp]
953 / 0 AT1G67370 655 / 0.0 ASYNAPTIC 1, DNA-binding HORMA family protein (.1)
Lus10015786
[exp]
696 / 0 AT1G67370 600 / 0.0 ASYNAPTIC 1, DNA-binding HORMA family protein (.1)
Lus10037019
[exp]
681 / 0 AT1G67370 621 / 0.0 ASYNAPTIC 1, DNA-binding HORMA family protein (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.003G173200
[exp]
683 / 0 AT1G67370 746 / 0.0 ASYNAPTIC 1, DNA-binding HORMA family protein (.1)
Potri.001G055201
[exp]
640 / 0 AT1G67370 700 / 0.0 ASYNAPTIC 1, DNA-binding HORMA family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0651 Mad2 PF02301 HORMA HORMA domain
Representative CDS sequence
>Lus10040113 pacid=23174186 polypeptide=Lus10040113 locus=Lus10040113.g ID=Lus10040113.BGIv1.0 annot-version=v1.0
ATGACTAGAAATCTACTGCGGATTGCAATATTCAATATCAGTTACATCAGAGGTCTGTTTCCGGAGAAATATTTCACGGACAAGAATGTTCCTGCATTAG
AGATGAAGATCAAGAAGCTCATGCCGCTGGATGCAGAATCTCGTCGACTGATTGACTGGATGGAGAAAGGTGTCTACGATGCATTGCAGAAGAAGTACCT
TAAGATGCTTTTGTTCTGCGTGTGTGAGGCAATAGACGGACCTATGATTGAGGAATATGCATTTTCCTTTAGTTATTCCGATTCAGATAGTCAAGAGGTA
TCAATGAACTTTAACCGCATTGGAAACAAGAAAAAGGGAGGAACCTTCAAGTGTAACTCCATGACAGAGATTACTCCCAATCAGATGAGGAGTTCGGCTT
GTAAAATGGTTCGTACCCTTGTTCAGCTGATGAGAACTCTAGACAAGATGCCTGAGGAGCGCACTATACTGATGAAACTCCTCTACTATGATGATGGCAC
GCCTGCAGAGTATGAGCCACCATTCTTCAAAGTGTGCTCAGAAGAAGCCCATAATCCATGGACTAAAAGTCCTTTGAAGATAGAGGTTGGGAATGTCGAT
AGCAAACATTTTGTGTTGGCCCTCAAGGTGAAAAGTGTGCTTGATCCATGTGATGATGAATATGGGGATATGGAGGATAATGACGAGAGCTTAGGAGCTG
ATTCTGATGGAATATACGGTTCATCTGATTCTGATACTGAGGTTAACCAATCAAAAGAAGACCGATATATAGTAGCACCAGCTGGAAAGAAACAACTGGA
AACAGATACTCGCATGGTCAATGAAGGTTGCAAAGATGATACACAGAATCCAGAAGAAGATGGACAAGAACTGGCTAGGGTGAAGGAGTGGATCGATAGT
TTACACTGCGATACAATTGAACTGACTGATATTCTCTCCAATTTCACTGATATCTCAGTGGTACTTACTGAAGAAATCATTGACAAGCTTGTCCAAGAAG
ATGTTTTATCCAGAGCTGGAGAAGATGTTTACATTATAAACAAGCACAGGGTATCTTATTATGACTTCAATACGGTTAAAGAGGAAAGGGAACGCCAGAC
GATTGCCTTTGGGGAGAAAACTCCACGAGTAGATGATCACTTGTACATGAAGGCTTTGTACCATGTGCTCCCAATGACTTGCGTGACGACCCCACAGCTT
CAGAGTAAACTAGGTGGAGAAGCTAGTCTGACTACAGTGCGTAAACTTATGAATAGGATGACCAAGGATGGTTACCTTGAAGCCCAAGGCAACCGCAGAC
TAGGCAAGCGTGTGATCCACTCTATGACGATGGAGAAAAAGCTTCTGGAAGTCAAGAGAGCCCTTCGAAATGATACTATGGACCAGAGGGATAATAACTC
AACATGTGGAGTTGTGCAATCCGTCGGCTCAGATCTTAGTCGCATGAAGCTTGCATCAGAAATAAATAAGAAGGGATCAATCAGGACCGATCTGGTTGTC
TGGGAACCTGGAAACACTCCAACTAGTAGGGCTGAGCCTGTTGCTTCGAGAGAAAGTTTCACCCTAGGGTATGGACAAGAAGGCCATTGTCTGCAAATGG
CTACTGAGGGAACCATTGTCTGCAGCGGAGCTACCGAGGACAAGAAGGCCAGGAAAGCCAGCAGGGTAATAGCTTAG
AA sequence
>Lus10040113 pacid=23174186 polypeptide=Lus10040113 locus=Lus10040113.g ID=Lus10040113.BGIv1.0 annot-version=v1.0
MTRNLLRIAIFNISYIRGLFPEKYFTDKNVPALEMKIKKLMPLDAESRRLIDWMEKGVYDALQKKYLKMLLFCVCEAIDGPMIEEYAFSFSYSDSDSQEV
SMNFNRIGNKKKGGTFKCNSMTEITPNQMRSSACKMVRTLVQLMRTLDKMPEERTILMKLLYYDDGTPAEYEPPFFKVCSEEAHNPWTKSPLKIEVGNVD
SKHFVLALKVKSVLDPCDDEYGDMEDNDESLGADSDGIYGSSDSDTEVNQSKEDRYIVAPAGKKQLETDTRMVNEGCKDDTQNPEEDGQELARVKEWIDS
LHCDTIELTDILSNFTDISVVLTEEIIDKLVQEDVLSRAGEDVYIINKHRVSYYDFNTVKEERERQTIAFGEKTPRVDDHLYMKALYHVLPMTCVTTPQL
QSKLGGEASLTTVRKLMNRMTKDGYLEAQGNRRLGKRVIHSMTMEKKLLEVKRALRNDTMDQRDNNSTCGVVQSVGSDLSRMKLASEINKKGSIRTDLVV
WEPGNTPTSRAEPVASRESFTLGYGQEGHCLQMATEGTIVCSGATEDKKARKASRVIA

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G67370 ASY1, ATASY1 ASYNAPTIC 1, DNA-binding HORMA... Lus10040113
[exp]
0 1
AT4G24450 PWD, GWD3, ATGW... "phosphoglucan, water dikinase... Lus10032829
[exp]
5.0 0.8852
AT1G60890 Phosphatidylinositol-4-phospha... Lus10015456
[exp]
8.1 0.8560
AT5G17770 CBR1, ATCBR NADH:cytochrome B5 reductase 1... Lus10034869
[exp]
13.4 0.8650
AT5G64240 AtMCP1a, ATMC3 metacaspase 1a, metacaspase 3 ... Lus10035630
[exp]
14.8 0.8687
AT5G51280 DEAD-box protein abstrakt, put... Lus10012899
[exp]
16.2 0.7614
AT2G34540 unknown protein Lus10028123
[exp]
23.0 0.8456
AT2G18196 Heavy metal transport/detoxifi... Lus10008284
[exp]
23.5 0.8592
AT3G56640 SEC15A exocyst complex component sec1... Lus10010439
[exp]
27.1 0.7795
AT5G14530 Transducin/WD40 repeat-like su... Lus10032128
[exp]
29.1 0.7332
AT1G06450 Polynucleotidyl transferase, r... Lus10017895
[exp]
29.2 0.7468

Lus10040113 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.