Plant FIBer expression Database

Lus10040114 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G71430 81 / 3e-19 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10007091
[exp]
142 / 1e-42 AT1G71430 85 / 1e-20 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.015G035700
[exp]
114 / 1e-31 AT1G71430 100 / 5e-27 unknown protein
Potri.009G083702
[exp]
44 / 7e-06 ND /
PFAM info
Representative CDS sequence
>Lus10040114 pacid=23174200 polypeptide=Lus10040114 locus=Lus10040114.g ID=Lus10040114.BGIv1.0 annot-version=v1.0
ATGGGAGGTTCAAGCAAAGAGCTTTTGGTGCTGGAGAAGGAGAATTCAGCGTCGGCTTTCCAATCTTCCCTCCTTGTCTCTGGGAGGCGTTCGAGTGCTT
CTCCATCCAAAGTCGAGGAAAAGCTAGTAACTGCTCCAATCCCTCAAAGCCAAGTCCTTGGCAAAGTTATAGATTTTCTTGGAGTTTTCTCCGAAGCTAA
CCGACAGCTGCAGAGAGATTCCAAGGATAACTGTAAAAAGTACGACATTGAAGCACTCACGGGAAATGAATCTGAAGTCATTGAAATGGATTTGATGCTG
GGTGTAGCAGAGCTTCGCAATCAGCAAGCTTTGGAAGCTGCTGAAGCTGCCTTAGGTGGTGCCCAACCATTGAGAAGATTCAATGGTAGTGAGTCGGACT
CGAGTGATGATGATGATGATGAGGATGATGATGATGAAAGTGGTAGCCAGAACAGCAATGGCGACGGAAGTCTTGACAATGAGAAGAACAGGAAAGACGC
ATCAAAGTTGGGGGCAGATGGTCCAAGTAGAGTTGACAGCAAAAGGAGGCCAAAGAAGCAGCCTAAAATTATTGAGATGCCTTGA
AA sequence
>Lus10040114 pacid=23174200 polypeptide=Lus10040114 locus=Lus10040114.g ID=Lus10040114.BGIv1.0 annot-version=v1.0
MGGSSKELLVLEKENSASAFQSSLLVSGRRSSASPSKVEEKLVTAPIPQSQVLGKVIDFLGVFSEANRQLQRDSKDNCKKYDIEALTGNESEVIEMDLML
GVAELRNQQALEAAEAALGGAQPLRRFNGSESDSSDDDDDEDDDDESGSQNSNGDGSLDNEKNRKDASKLGADGPSRVDSKRRPKKQPKIIEMP

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G71430 unknown protein Lus10040114
[exp]
0 1
AT2G15910 CSL zinc finger domain-contain... Lus10021009
[exp]
4.8 0.7672
AT1G18800 NRP2 NAP1-related protein 2 (.1) Lus10023599
[exp]
6.7 0.7965
AT3G53740 Ribosomal protein L36e family ... Lus10016466
[exp]
10.0 0.8474
AT3G56070 ROC2 rotamase cyclophilin 2 (.1.2) Lus10022012
[exp]
17.1 0.8256
AT1G26910 RPL10B ribosomal protein L10 B, Ribos... Lus10031568
[exp]
18.3 0.7786
AT1G63980 D111/G-patch domain-containing... Lus10032300
[exp]
22.3 0.7948
AT5G26110 Protein kinase superfamily pro... Lus10006903
[exp]
27.2 0.7367
AT2G24830 C3HZnF zinc finger (CCCH-type) family... Lus10026901
[exp]
29.2 0.7517
Lus10027105
[exp]
36.7 0.7360
AT1G16740 Ribosomal protein L20 (.1) Lus10033326
[exp]
37.8 0.7731

Lus10040114 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.