Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G17030 123 / 5e-33 ATHEXPBETA3.1, ATEXPR1, AT-EXPR, ATEXLB1 expansin-like B1 (.1) AT4G38400 98 / 3e-23 ATEXPL2, ATHEXPBETA2.2, EXPL2, ATEXLA2 EXPANSIN L2, expansin-like A2 (.1) AT3G45970 97 / 5e-23 ATHEXPBETA2.1, ATEXPL1, ATEXLA1 EXPANSIN L1, expansin-like A1 (.1) AT3G45960 92 / 3e-21 ATHEXPBETA2.3, ATEXPL3, ATEXLA3 expansin-like A3 (.1.2) AT1G65681 77 / 3e-16 EXPB6 beta expansin 6 (.1) AT1G65680 69 / 4e-13 ATHEXPBETA1.4, ATEXPB2 expansin B2 (.1) AT2G45110 67 / 2e-12 ATHEXPBETA1.1, ATEXPB4 expansin B4 (.1) AT5G56320 58 / 1e-09 ATHEXPALPHA1.5, ATEXP14, ATEXPA14 EXPANSIN 14, expansin A14 (.1) AT4G28250 57 / 3e-09 ATHEXPBETA1.6, ATEXPB3 expansin B3 (.1.2) AT5G02260 55 / 2e-08 ATHEXPALPHA1.10, ATEXP9, ATEXPA9 expansin A9 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030931 [exp] 394 / 1e-138 AT4G17030 183 / 2e-57 expansin-like B1 (.1) Lus10001244 [exp] 241 / 8e-78 AT4G17030 153 / 3e-45 expansin-like B1 (.1) Lus10042095 [exp] 178 / 5e-53 AT4G17030 139 / 3e-39 expansin-like B1 (.1) Lus10001009 [exp] 140 / 2e-39 AT4G17030 308 / 2e-106 expansin-like B1 (.1) Lus10011013 [exp] 139 / 3e-39 AT4G17030 302 / 2e-104 expansin-like B1 (.1) Lus10000958 [exp] 139 / 5e-39 AT4G17030 303 / 1e-104 expansin-like B1 (.1) Lus10003336 [exp] 130 / 3e-35 AT3G45970 320 / 6e-111 EXPANSIN L1, expansin-like A1 (.1) Lus10011012 [exp] 128 / 7e-35 AT4G17030 219 / 2e-71 expansin-like B1 (.1) Lus10022639 [exp] 129 / 8e-35 AT3G45970 321 / 3e-111 EXPANSIN L1, expansin-like A1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G087000 [exp] 318 / 1e-108 AT4G17030 183 / 3e-57 expansin-like B1 (.1) Potri.001G147200 [exp] 292 / 2e-98 AT4G17030 180 / 4e-56 expansin-like B1 (.1) Potri.003G083200 [exp] 154 / 9e-45 AT4G17030 311 / 1e-107 expansin-like B1 (.1) Potri.001G151500 [exp] 144 / 1e-40 AT4G17030 297 / 6e-102 expansin-like B1 (.1) Potri.004G181700 [exp] 127 / 2e-34 AT4G38400 348 / 3e-122 EXPANSIN L2, expansin-like A2 (.1) Potri.009G141400 [exp] 127 / 3e-34 AT4G38400 349 / 5e-122 EXPANSIN L2, expansin-like A2 (.1) Potri.014G066300 [exp] 77 / 9e-16 AT1G65680 322 / 2e-111 expansin B2 (.1) Potri.010G202500 [exp] 67 / 2e-12 AT2G39700 473 / 2e-171 expansin A4 (.1) Potri.013G134300 [exp] 64 / 1e-11 AT4G28250 402 / 2e-143 expansin B3 (.1.2) Potri.017G085300 [exp] 62 / 5e-11 AT1G26770 355 / 5e-125 ARABIDOPSIS THALIANA EXPANSIN ALPHA 1.1, ARABIDOPSIS THALIANA EXPANSIN 10, expansin A10 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0159 [flax] [poplar] E-set PF01357 [flax] [poplar] Expansin_C Expansin C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10040115 pacid=23174085 polypeptide=Lus10040115 locus=Lus10040115.g ID=Lus10040115.BGIv1.0 annot-version=v1.0 ATGGCTCTCTCCTCCATTCGATCCCTTGTCTGCCTACTTGCAGTTGTGCTGTTCATGCAGAACCTGCAGACACATGCAGCAACATGCAAAGACTGCTTCG TTCACTCTCGAGCTGCCCACTACCCGAATTCTGATGAACAAGGAACAGAGAATGGCGCCTGCGGATTTGGTACATTTGGAGCAACTTTAAACGGTGGAGA TGTATCAGCTGCCTCGGAGCTCTATCGTAATGGTCTTGGATGTGGTGCTTGTTATCAGACCAAGGATGCAGCTGCCTCGATACTAGCCCATGGAATCGTC GACATCGAATATAGACGTGTTTCATGCTACCATCCATACAATAATATAACGATCAAGATTGACGAGAACAGCAACTACCCGTATTACCTTGCTTTTGTCA TACGGTATCAACAAGGACAAAAGGATATTACCGCCGTTCAGCTCTGTGAGCTTCTGGAGAGGAGCTACGGAGCTGTGTGGACTACTACCTCGCCCCCCAG CGGCCCACTATCCCTAAGGATGCTATTCAGCAATGATGATGGAGACGAGTCATGGGTTGTTCCTGCTAACAATATACCTAGCGACTGGAAAGCAGGAGAA ACATATGACACAGGAGATAAAGTAGGAGATGCACTTGTGATGGTAGTCAATTCTTTGAATAGCTATTTTGAAAGTAAGCCGAAGAAAGAAGAACAACGTC ACTCTACAAGGGTGATCGACGAAATGCTATTCAACATACCGGAGTTTAGTCGTACCGAAATCGCAATGGCAGTTATCAAAAACCCTGAAAAAGTTGATGC CAAGTTGGCGAAGATCAATTTTCATACTTGGCTGCCTTCTCTGGTTGAGCAAGCTATGCTGACTATAAATTATGCCATGTACACCAGAAAGATTGTGGGG TTCTTTCGATCAACTGATGAAGAATACCATTACAGGGTTCAATGGTTTTATAAGGCTGAAGATACAGCAAGCATATTAAACTCTGTTGGGATTTGCAGTC ACAAGGTTTCTTCAAAGCGATGTACCTCCTTCCACGATGAAGATCCTCTGCATTTCTGTCGTTTATGCTAG
AA sequence Show only first row Show all	>Lus10040115 pacid=23174085 polypeptide=Lus10040115 locus=Lus10040115.g ID=Lus10040115.BGIv1.0 annot-version=v1.0 MALSSIRSLVCLLAVVLFMQNLQTHAATCKDCFVHSRAAHYPNSDEQGTENGACGFGTFGATLNGGDVSAASELYRNGLGCGACYQTKDAAASILAHGIV DIEYRRVSCYHPYNNITIKIDENSNYPYYLAFVIRYQQGQKDITAVQLCELLERSYGAVWTTTSPPSGPLSLRMLFSNDDGDESWVVPANNIPSDWKAGE TYDTGDKVGDALVMVVNSLNSYFESKPKKEEQRHSTRVIDEMLFNIPEFSRTEIAMAVIKNPEKVDAKLAKINFHTWLPSLVEQAMLTINYAMYTRKIVG FFRSTDEEYHYRVQWFYKAEDTASILNSVGICSHKVSSKRCTSFHDEDPLHFCRLC

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G17030		ATHEXPBETA3.1, ...	expansin-like B1 (.1)		Lus10040115 [exp]	0	1
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Lus10003459 [exp]	2.8	0.8512
					Lus10023496 [exp]	9.2	0.8477
AT1G03070			Bax inhibitor-1 family protein...		Lus10022085 [exp]	17.2	0.8583
AT5G05320			FAD/NAD(P)-binding oxidoreduct...		Lus10033385 [exp]	25.2	0.8298
AT4G35580	NAC	NTL9, CBNAC	NAC transcription factor-like ...		Lus10006119 [exp]	29.2	0.8448
AT1G62510			Bifunctional inhibitor/lipid-t...		Lus10001493 [exp]	29.2	0.7972
					Lus10041183 [exp]	39.0	0.7724
AT5G16990			Zinc-binding dehydrogenase fam...		Lus10007853 [exp]	55.9	0.7534
AT5G60900		RLK1	receptor-like protein kinase 1...		Lus10031231 [exp]	56.7	0.7363
AT1G74320			Protein kinase superfamily pro...		Lus10024127 [exp]	67.5	0.7481

Compare expression of checked genes

Lus10040115 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.