Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G38740 347 / 3e-122 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT1G56500 78 / 3e-16 haloacid dehalogenase-like hydrolase family protein (.1) AT4G21470 62 / 4e-11 ATFMN/FHY riboflavin kinase/FMN hydrolase (.1) AT4G39970 50 / 3e-07 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT4G25840 41 / 0.0004 GPP1 glycerol-3-phosphatase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003018 [exp] 391 / 9e-139 AT2G38740 355 / 1e-124 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10030930 [exp] 298 / 9e-104 AT2G38740 222 / 5e-74 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10030929 [exp] 225 / 9e-76 AT2G38740 165 / 1e-52 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10018906 [exp] 84 / 2e-18 AT4G21470 556 / 0.0 riboflavin kinase/FMN hydrolase (.1) Lus10028605 [exp] 83 / 4e-18 AT4G21470 558 / 0.0 riboflavin kinase/FMN hydrolase (.1) Lus10020699 [exp] 74 / 7e-15 AT1G56500 1467 / 0.0 haloacid dehalogenase-like hydrolase family protein (.1) Lus10029840 [exp] 73 / 2e-14 AT1G56500 1528 / 0.0 haloacid dehalogenase-like hydrolase family protein (.1) Lus10018435 [exp] 62 / 4e-11 AT4G21470 553 / 0.0 riboflavin kinase/FMN hydrolase (.1) Lus10006954 [exp] 59 / 3e-10 AT5G57440 387 / 4e-137 GLYCEROL-3-PHOSPHATASE 2, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G147300 [exp] 374 / 1e-132 AT2G38740 360 / 5e-127 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.003G086900 [exp] 367 / 6e-130 AT2G38740 359 / 6e-127 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.001G147400 [exp] 336 / 9e-118 AT2G38740 350 / 2e-123 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.014G043500 [exp] 296 / 5e-101 AT2G38740 297 / 1e-101 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.002G135000 [exp] 172 / 2e-53 AT2G38740 176 / 4e-55 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.013G007800 [exp] 74 / 9e-15 AT1G56500 1489 / 0.0 haloacid dehalogenase-like hydrolase family protein (.1) Potri.002G077200 [exp] 64 / 2e-11 AT4G21470 561 / 0.0 riboflavin kinase/FMN hydrolase (.1) Potri.005G183400 [exp] 62 / 6e-11 AT4G21470 575 / 0.0 riboflavin kinase/FMN hydrolase (.1) Potri.018G092500 [exp] 49 / 5e-07 AT5G57440 398 / 2e-142 GLYCEROL-3-PHOSPHATASE 2, Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.007G095200 [exp] 49 / 1e-06 AT4G39970 439 / 3e-156 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0137 [flax] [poplar] HAD PF00702 [flax] [poplar] Hydrolase haloacid dehalogenase-like hydrolase
Representative CDS sequence Show only first row Show all	>Lus10040116 pacid=23174039 polypeptide=Lus10040116 locus=Lus10040116.g ID=Lus10040116.BGIv1.0 annot-version=v1.0 ATGACCGATTCTAGCAATTCTCTCACCAGATGTGTTCCGATTGAAGCTGTACTCTTTGATGTTGATGGAACTCTTTGTGATACCGATCCAATCCATCATC GTGCCTTTGTTCAACTGCTTCAAGAGATCAATTACAACAATGGAGTTCCCATAACTGAGGAATTCTTCATCAAGAACATTGCTGGCAAGCACAATGAGGA AATCGCGCAAGTCTTGTTCCCTGACGATTTACCTCGAGGCATAAAGTTCACTATAGATAAAGAAGCACTTTTCCGGAAATTAGCAGCTGAGCACATTCCC GCTGTAGAGGGCTTGTACAAAGTGACCAAGTGGATCGAAGATCGTGGCTTGAAACGTGCTGCAGTGACCAACGCTCCGAAACTAAATGCTGAACTCATGA TCTCAAAGCTCGGGCTGACCGATTTCTTCCAAGCTGTCATTCTCGGAGATGATTGCGAGCATGCGAAGCCTCACCCAGAACCTTACCTGAAAGCTCTGGA CGTGCTCAAAGTGTCAAAGGATCACACTTTTGTTTTCGAGGATTCTGTATCTGGAATAAAAGCTGGAGTTGCAGCTGGGTTGCAAGGCATCGGTATAGCC ACTAGGAATCCGGAGGACTTGCTGATGACAGCAAAGCCTACCTTTCTGATAAAGAACTACGCAGATCCGAAACTGTGGGAAGCTCTTGAACAAGTCGATA AATTTACGGCAGCTGGGAAGCAGCATACTGATTGA
AA sequence Show only first row Show all	>Lus10040116 pacid=23174039 polypeptide=Lus10040116 locus=Lus10040116.g ID=Lus10040116.BGIv1.0 annot-version=v1.0 MTDSSNSLTRCVPIEAVLFDVDGTLCDTDPIHHRAFVQLLQEINYNNGVPITEEFFIKNIAGKHNEEIAQVLFPDDLPRGIKFTIDKEALFRKLAAEHIP AVEGLYKVTKWIEDRGLKRAAVTNAPKLNAELMISKLGLTDFFQAVILGDDCEHAKPHPEPYLKALDVLKVSKDHTFVFEDSVSGIKAGVAAGLQGIGIA TRNPEDLLMTAKPTFLIKNYADPKLWEALEQVDKFTAAGKQHTD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G38740			Haloacid dehalogenase-like hyd...		Lus10040116 [exp]	0	1
AT2G40600			appr-1-p processing enzyme fam...		Lus10029040 [exp]	2.4	0.9778
AT1G72310		ATL3	RING/U-box superfamily protein...		Lus10016427 [exp]	3.0	0.9769
AT2G38740			Haloacid dehalogenase-like hyd...		Lus10030929 [exp]	3.2	0.9736
AT1G15170			MATE efflux family protein (.1...		Lus10018134 [exp]	3.5	0.9735
AT3G59710			NAD(P)-binding Rossmann-fold s...		Lus10035736 [exp]	4.0	0.9783
AT4G15093			catalytic LigB subunit of arom...		Lus10034361 [exp]	5.3	0.9753
AT3G52450		PUB22	plant U-box 22 (.1)		Lus10029393 [exp]	6.0	0.9728
AT5G65380			MATE efflux family protein (.1...		Lus10012741 [exp]	7.9	0.9688
AT3G17980		AtC2	Arabidopsis thaliana C2 domain...		Lus10017629 [exp]	11.5	0.9657
AT2G03340	WRKY	WRKY3	WRKY DNA-binding protein 3 (.1...		Lus10036800 [exp]	12.2	0.9638

Compare expression of checked genes

Lus10040116 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.