Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G46930 93 / 2e-22 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) AT5G46970 88 / 8e-21 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) AT5G46940 80 / 6e-18 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) AT5G46960 79 / 2e-17 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) AT5G46950 68 / 2e-13 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) AT5G38610 66 / 1e-12 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) AT5G46990 61 / 6e-11 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) AT5G46980 53 / 3e-08 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) AT1G54620 50 / 5e-07 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030926 [exp] 125 / 2e-35 AT5G46930 58 / 2e-11 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Lus10019498 [exp] 113 / 6e-30 AT5G46970 87 / 1e-21 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Lus10043346 [exp] 99 / 3e-25 AT5G46940 69 / 3e-15 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Lus10001464 [exp] 45 / 2e-05 AT4G02250 112 / 1e-31 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Lus10008201 [exp] 44 / 7e-05 AT4G02250 113 / 3e-32 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Lus10031483 [exp] 40 / 0.0009 AT5G46940 64 / 8e-13 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G086500 [exp] 141 / 2e-40 AT5G46940 119 / 6e-34 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Potri.014G044100 [exp] 105 / 5e-27 AT5G46940 111 / 3e-31 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Potri.003G086600 [exp] 94 / 7e-23 AT5G38610 123 / 2e-35 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Potri.010G209800 [exp] 42 / 0.0001 AT5G64620 93 / 5e-24 cell wall / vacuolar inhibitor of fructosidase 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04043 [flax] [poplar] PMEI Plant invertase/pectin methylesterase inhibitor
Representative CDS sequence Show only first row Show all	>Lus10040119 pacid=23174170 polypeptide=Lus10040119 locus=Lus10040119.g ID=Lus10040119.BGIv1.0 annot-version=v1.0 ATGGTGTGGGCTAGGAAGGCGAAGAATGCTTCGCTTGTTATACGAAAGAATTGCATGGTAGGCAGAAGTTTGTTCCTTCTTTTTGTTGGACAAACAAGTA AACAACTTTCGGGATCATTTTTGTATCGACCCATCTTCCCAAAGATGCCGAAGAAATCACATCACTGCACAAACACAACGCATATGGGTGATGCTGTACT TTCCTCATTCTCCCATTCCTCCATCCACACCCACCTTTCTCCATCATCAATCATTCATCTCCCCCAAGAATATACCAAGCTGTATAGTAAACTCGTAAAC TTCTTTTGTAGAGAGGCCCCCCTATATAAATTATCAAGCGCTCATCAGCATCTAGAACAGACCAAAATCACACCCATATCGAACACAACCAAGACGATGA AACTTCAAACATTACTAATTACTCTCACAGTACTAACGACGGCTCTGCTAATTTCCTCCTCATCAATGGCGTGTACCAATAACTTCGTTCGCCGTCACTG TAAAGAAGCAGCAAACTCGGATCCCAACTTCACCTACAACTTCTGCGTCCAATGCATCGAGGATGATGATACCATCACCAACATCCACAACGTGACTACC CTTGAGCAGCTGGTGGGCCTCACGATCAATCTCACGGTCGTTAACGCCACAAACATCAAAGGCCGGATCTCCCAGTTACTGTCAGCCCCAAGGACGAGGA CGAGGAGCATGGATGGTTACCAGAAGCGCGCTCTACAGGATTGCTTGGAGCTTTACTCTGACGCGAAAGCGGCCTTGATAGACGCAAAGAAGGATGTGCT GGAGTACGGTGACTACTACAAGGCGAATGTCGAGGCCAGCGCGGCCATGGATTCGTCGGTTACGTGTGAGGATGGGTTTAGTGATGAGAAGAGAGGCGTG GTTTCTCCTTTGAGCAAGGAGAACGCGGTGTTCTTCCGGTTGACTGCCATTGTTCTTTCTTTCATTAATATGTTGCGTAATTAG
AA sequence Show only first row Show all	>Lus10040119 pacid=23174170 polypeptide=Lus10040119 locus=Lus10040119.g ID=Lus10040119.BGIv1.0 annot-version=v1.0 MVWARKAKNASLVIRKNCMVGRSLFLLFVGQTSKQLSGSFLYRPIFPKMPKKSHHCTNTTHMGDAVLSSFSHSSIHTHLSPSSIIHLPQEYTKLYSKLVN FFCREAPLYKLSSAHQHLEQTKITPISNTTKTMKLQTLLITLTVLTTALLISSSSMACTNNFVRRHCKEAANSDPNFTYNFCVQCIEDDDTITNIHNVTT LEQLVGLTINLTVVNATNIKGRISQLLSAPRTRTRSMDGYQKRALQDCLELYSDAKAALIDAKKDVLEYGDYYKANVEASAAMDSSVTCEDGFSDEKRGV VSPLSKENAVFFRLTAIVLSFINMLRN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G46930			Plant invertase/pectin methyle...		Lus10040119 [exp]	0	1
AT5G13870		EXGT-A4, XTH5, ...	endoxyloglucan transferase A4,...		Lus10030923 [exp]	13.2	0.9536
AT4G24510		VC2, VC-2, CER2	ECERIFERUM 2, HXXXD-type acyl-...		Lus10028171 [exp]	17.3	0.9379
AT1G18400	bHLH	bHLH044, BEE1	BR enhanced expression 1 (.1)		Lus10017602 [exp]	19.1	0.9395
AT1G70250			receptor serine/threonine kina...		Lus10032228 [exp]	19.6	0.8818
AT3G50330	bHLH	HEC2, bHLH037	HECATE 2, basic helix-loop-hel...		Lus10012670 [exp]	21.6	0.9322
AT1G18400	bHLH	bHLH044, BEE1	BR enhanced expression 1 (.1)		Lus10033562 [exp]	29.9	0.9324
AT4G34760			SAUR-like auxin-responsive pro...		Lus10028466 [exp]	36.6	0.9318
AT5G04190		PKS4	phytochrome kinase substrate 4...		Lus10040995 [exp]	38.1	0.9316
AT1G03790	C3HZnF	SOM	SOMNUS, Zinc finger C-x8-C-x5-...		Lus10017708 [exp]	38.2	0.9188
AT3G12880			Plant invertase/pectin methyle...		Lus10031197 [exp]	43.5	0.9276

Compare expression of checked genes

Lus10040119 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.